Jatropha Genome Database

JcCB0896111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0896111.10 - phase: 0 
         (79 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g20760.1                                                        80   4e-16
Glyma01g03240.1                                                        70   3e-13
Glyma02g04330.1                                                        68   2e-12
Glyma08g39010.1                                                        57   5e-09

>Glyma18g20760.1 
          Length = 119

 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 56/83 (67%), Gaps = 9/83 (10%)

Query: 1  MGFSGKPQVDNGLELDC----KKWVIAGIPLRAPLKKIYTNPVDKESESD---HDC--ST 51
          MGFS K Q++   + D     +KWVIAGI LRAPLK IYT P++KE + +    DC  ST
Sbjct: 1  MGFSEKAQLEGAFDSDTNNNNRKWVIAGIALRAPLKPIYTIPMEKEQKEEVETEDCSSST 60

Query: 52 TPTSEESRISARLTCPPAPKKRK 74
          TPT+ ES+I    TCPPAP+KRK
Sbjct: 61 TPTNVESKIPTPFTCPPAPRKRK 83


>Glyma01g03240.1 
          Length = 107

 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 50/76 (65%), Gaps = 4/76 (5%)

Query: 1  MGFSGKPQVDNGLELDCKKWVIAGIPLRAPLKKIYTNPVDKESESDHD--CSTTPTSEES 58
          MGFS KPQV+       +KWVIAGIP RAPLK I+T   +++ E      CSTTP  EE+
Sbjct: 1  MGFSEKPQVEESD--STRKWVIAGIPSRAPLKPIFTTKEEEKDEEGDLEECSTTPKGEEA 58

Query: 59 RISARLTCPPAPKKRK 74
          +I   L CPPAP+KRK
Sbjct: 59 KIPTTLKCPPAPRKRK 74


>Glyma02g04330.1 
          Length = 104

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 49/75 (65%), Gaps = 5/75 (6%)

Query: 1  MGFSGKPQVDNGLELDCKKWVIAGIPLRAPLKKIYTNPVDKESESDHDCS-TTPTSEESR 59
          MGFS KPQV+       +KWVIAGIP R PLK IYT    +E   + +CS TTP  EE++
Sbjct: 1  MGFSEKPQVEESD--STRKWVIAGIPSRVPLKPIYTT--KEEEHDEEECSSTTPKGEEAK 56

Query: 60 ISARLTCPPAPKKRK 74
          I   L CPPAPKKRK
Sbjct: 57 IPTSLKCPPAPKKRK 71


>Glyma08g39010.1 
          Length = 132

 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 51/94 (54%), Gaps = 20/94 (21%)

Query: 1  MGFSGKPQVDNGLELDC------KKWVIAGIPLRAPLKKIYTNPVDKESESD-------- 46
          MGFS K QV+   + D       +KWVIAGI LRAPLK IYT  +  E E          
Sbjct: 1  MGFSEKAQVEGAFDSDTSNNNNNRKWVIAGIALRAPLKPIYTTMIPTEKEQKEEVEIETT 60

Query: 47 ------HDCSTTPTSEESRISARLTCPPAPKKRK 74
                   +TTPTS ES+I   LTCPPAP+KRK
Sbjct: 61 EECSSCSSSTTTPTSVESKIPTPLTCPPAPRKRK 94