Jatropha Genome Database

JcCB0894111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0894111.10 - phase: 2 /partial
         (233 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g06510.1                                                       120   2e-27
Glyma01g38290.1                                                       115   6e-26
Glyma16g25550.1                                                       114   7e-26
Glyma02g06500.1                                                        65   5e-11
Glyma04g03560.1                                                        56   3e-08

>Glyma02g06510.1 
          Length = 518

 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/237 (40%), Positives = 109/237 (45%), Gaps = 9/237 (3%)

Query: 1   ITHRAFCDALAEESARATQTXXXXXXXXXXXXXQESEPKVQVDXXXXXXXXXXXXXXXXX 60
           ITHRAFCDALAEE+AR+                 +S P   V                  
Sbjct: 178 ITHRAFCDALAEENARSHTVVKDISENDSKVLIGDSPPPQPVAATVAATTAAATTTTTTT 237

Query: 61  XXXXXQSAGVISSSISPNHSPELP-DNPSPIIEE---ALAPQXXXXXXXXXXXXXXXXXX 116
                  A  + SS    H+ +LP +NP  +IEE   A A                    
Sbjct: 238 TITSTTQANSVMSSCLQTHNLDLPENNPPQVIEEPQAATATAISGSCGSSSSCSTSNGGA 297

Query: 117 XXXXXXXXXXXXXXXXXXXXXXXIQPPQTPAFTDLIRAMAHPDRPADLAPPSSTEPISLC 176
                                  +Q  QTPAF+DLIRAM  P+ PAD     S+E ISLC
Sbjct: 298 TCNSNSSSSVFASLFASSTASVTLQS-QTPAFSDLIRAMGPPEHPADQISGPSSEAISLC 356

Query: 177 LSTSHGSSIFGTAGQERRQYA-PPPQPAMSATALLQKAAQIGAAATNASLLRGFGIV 232
           LST+  S IF T G   RQYA   P PAMSATALLQKAAQ+GAAATNASLLRG GIV
Sbjct: 357 LSTTSASPIFATGG---RQYASSSPHPAMSATALLQKAAQMGAAATNASLLRGLGIV 410


>Glyma01g38290.1 
          Length = 478

 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 58/62 (93%)

Query: 171 EPISLCLSTSHGSSIFGTAGQERRQYAPPPQPAMSATALLQKAAQIGAAATNASLLRGFG 230
           EPISLCL+T+HGSSIFGT  QERRQYAPPPQPAMSATALLQKAAQ+GAAATNAS LRG G
Sbjct: 303 EPISLCLATNHGSSIFGTGRQERRQYAPPPQPAMSATALLQKAAQMGAAATNASFLRGLG 362

Query: 231 IV 232
           IV
Sbjct: 363 IV 364


>Glyma16g25550.1 
          Length = 476

 Score =  114 bits (286), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 72/88 (81%), Gaps = 5/88 (5%)

Query: 144 QTPAFTDLIRAMAHPDRPADL-APPSSTEPISLCLSTSHGSSIFGTAGQERRQY-APPPQ 201
           QTPAF+DLIRAM  P+ PADL + PSS+E ISLCLST+  S IF T GQ   QY + PPQ
Sbjct: 310 QTPAFSDLIRAMGPPEHPADLISAPSSSEAISLCLSTTSASPIFATGGQ---QYVSSPPQ 366

Query: 202 PAMSATALLQKAAQIGAAATNASLLRGF 229
           PAMSATALLQKAAQ+GAAATNASLLRGF
Sbjct: 367 PAMSATALLQKAAQMGAAATNASLLRGF 394


>Glyma02g06500.1 
          Length = 494

 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 75/196 (38%), Gaps = 5/196 (2%)

Query: 1   ITHRAFCDALAEESARATQTXXXXXXXXXXXXXQESEPKVQVDXXXXXXXXXXXXXXXXX 60
           ITHRAFCDALAEE+AR+                 +S P   V                  
Sbjct: 178 ITHRAFCDALAEENARSHTVVKDISENDSKVLIGDSPPPQPVAATVAATTAAATTTTTTT 237

Query: 61  XXXXXQSAGVISSSISPNHSPELP-DNPSPIIEE---ALAPQXXXXXXXXXXXXXXXXXX 116
                  A  + SS    H+ +LP +NP  +IEE   A A                    
Sbjct: 238 TITSTTQANSVMSSCLQTHNLDLPENNPPQVIEEPQAATATAISGSCGSSSSCSTSNGGA 297

Query: 117 XXXXXXXXXXXXXXXXXXXXXXXIQPPQTPAFTDLIRAMAHPDRPADLAPPSSTEPISLC 176
                                  +Q  QTPAF+DLIRAM  P+ PAD     S+E ISLC
Sbjct: 298 TCNSNSSSSVFASLFASSTASVTLQS-QTPAFSDLIRAMGPPEHPADQISGPSSEAISLC 356

Query: 177 LSTSHGSSIFGTAGQE 192
           LST+  S IF T G+ 
Sbjct: 357 LSTTSASPIFATGGRH 372


>Glyma04g03560.1 
          Length = 473

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 49/87 (56%), Gaps = 11/87 (12%)

Query: 145 TPAFTDLIRAMAHPDRPADLAPPSSTEPISLCLSTSHGSSIFGTAGQERRQYAPPPQPAM 204
           T +FT+LI  +A    P  +      E  SL LST         +  +   Y   PQPA+
Sbjct: 291 TSSFTNLISNLARSQNPNTIM----RESTSLSLSTP-----LYLSNNDPLHYTASPQPAL 341

Query: 205 SATALLQKAAQIGAAATNASLLRGFGI 231
           SATALLQKAAQ+GA+  NASLLRG G+
Sbjct: 342 SATALLQKAAQMGAS--NASLLRGLGL 366