Jatropha Genome Database

JcCB0890131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0890131.10 - phase: 2 /partial
         (379 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g39720.1                                                        59   7e-09

>Glyma03g39720.1 
          Length = 1934

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 60/140 (42%), Gaps = 22/140 (15%)

Query: 19  KRKREKSLWGSLPFSMTQKGTDESEAVWSNIADACVVEGQDCI------------GTSMP 66
           K KR K  WGSLPFS   K  ++ E     +      E  D              G    
Sbjct: 533 KDKRNKQ-WGSLPFSSIDKANNDGEHATLLVTHPFESETGDSAHSNYLNRNEVRNGACFI 591

Query: 67  RNEGGKHSDTPMKNPDTDFCQIGDLVGCSVRDLMRRKRCHRIAQQECGNSGVKKVCAVGE 126
           RN+G   SD+          ++  LV CS+RDLMRRKR +R+ Q +C +   KK+     
Sbjct: 592 RNKGRDASDSK---------EVHKLVNCSLRDLMRRKRSYRVEQADCESGTTKKLLLDRH 642

Query: 127 HEPDNILMPNQLDLHAVNEE 146
            E +  L   QLDL  +  +
Sbjct: 643 EEQNACLWQKQLDLKTMQTD 662