Jatropha Genome Database

JcCB0888501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0888501.10 + phase: 0 /pseudo/partial
         (61 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g40710.1                                                        76   9e-15
Glyma19g43390.1                                                        75   1e-14

>Glyma03g40710.1 
          Length = 325

 Score = 75.9 bits (185), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/43 (81%), Positives = 38/43 (88%)

Query: 19  TDLDKEDKGKISKGEIRDALVHMGVEMGIPPFKEFPLLNDILK 61
           TDLD EDKGKISK EIR+ALV MGVEMG+PPF EFP LND+LK
Sbjct: 128 TDLDAEDKGKISKSEIRNALVQMGVEMGVPPFSEFPQLNDLLK 170


>Glyma19g43390.1 
          Length = 326

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/43 (81%), Positives = 38/43 (88%)

Query: 19  TDLDKEDKGKISKGEIRDALVHMGVEMGIPPFKEFPLLNDILK 61
           TDLD EDKGKISK EIR+ALV MGVEMG+PPF EFP LND+LK
Sbjct: 128 TDLDVEDKGKISKSEIRNALVQMGVEMGVPPFSEFPQLNDLLK 170