Jatropha Genome Database

JcCB0860891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0860891.10 - phase: 0 /partial
         (78 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g08540.3                                                        64   3e-11
Glyma02g08540.2                                                        64   3e-11
Glyma02g08540.1                                                        64   3e-11
Glyma06g11450.1                                                        50   7e-07
Glyma04g43250.1                                                        49   8e-07

>Glyma02g08540.3 
          Length = 148

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 3   ENIKIKEFSKYQIDQIEQMIGQDHVVHWELKRGERADIEGLISISCYRGIRHQDGLPLRG 62
           EN  +K+ SK ++  I +++ + +++  +LK+    D+  L+ I CYRGIRH D LP RG
Sbjct: 70  ENKFVKDLSKRELYSIRELLSK-YLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRG 128

Query: 63  QQTHTNARTCR 73
           Q+THTNART R
Sbjct: 129 QRTHTNARTRR 139


>Glyma02g08540.2 
          Length = 148

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 3   ENIKIKEFSKYQIDQIEQMIGQDHVVHWELKRGERADIEGLISISCYRGIRHQDGLPLRG 62
           EN  +K+ SK ++  I +++ + +++  +LK+    D+  L+ I CYRGIRH D LP RG
Sbjct: 70  ENKFVKDLSKRELYSIRELLSK-YLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRG 128

Query: 63  QQTHTNARTCR 73
           Q+THTNART R
Sbjct: 129 QRTHTNARTRR 139


>Glyma02g08540.1 
          Length = 148

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 3   ENIKIKEFSKYQIDQIEQMIGQDHVVHWELKRGERADIEGLISISCYRGIRHQDGLPLRG 62
           EN  +K+ SK ++  I +++ + +++  +LK+    D+  L+ I CYRGIRH D LP RG
Sbjct: 70  ENKFVKDLSKRELYSIRELLSK-YLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRG 128

Query: 63  QQTHTNARTCR 73
           Q+THTNART R
Sbjct: 129 QRTHTNARTRR 139


>Glyma06g11450.1 
          Length = 162

 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 26  HVVHWELKRGERADIEGLISISCYRGIRHQDGLPLRGQQTHTNARTCR 73
           +++  +L+R    +I+ L  I CYRGIRH  GLP RGQ+T  N RT +
Sbjct: 103 YMIEGDLRRFNAVNIKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRTLK 150


>Glyma04g43250.1 
          Length = 162

 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 26  HVVHWELKRGERADIEGLISISCYRGIRHQDGLPLRGQQTHTNART 71
           +++  +L+R    +I+ L  I CYRGIRH  GLP RGQ+T  N RT
Sbjct: 103 YMIEGDLRRFNAVNIKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRT 148