Jatropha Genome Database

JcCB0838301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0838301.10 + phase: 2 /partial
         (51 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g13860.1                                                        58   3e-09
Glyma09g02900.2                                                        54   3e-08
Glyma09g02900.1                                                        54   3e-08

>Glyma15g13860.1 
          Length = 224

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/34 (70%), Positives = 30/34 (88%)

Query: 1   DSYNPVPGVMQGVPASRDYTGGFSSKLMVGGLSL 34
           D+YNPVPG+M+GVP+SRDY GGF+SKLM   L+L
Sbjct: 139 DAYNPVPGLMEGVPSSRDYNGGFASKLMAKDLNL 172


>Glyma09g02900.2 
          Length = 343

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 29/34 (85%)

Query: 1   DSYNPVPGVMQGVPASRDYTGGFSSKLMVGGLSL 34
           D+YNPVPG+M+GVP+S DY GGF+SKLM   L+L
Sbjct: 258 DAYNPVPGLMEGVPSSGDYNGGFASKLMAKDLNL 291


>Glyma09g02900.1 
          Length = 350

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 29/34 (85%)

Query: 1   DSYNPVPGVMQGVPASRDYTGGFSSKLMVGGLSL 34
           D+YNPVPG+M+GVP+S DY GGF+SKLM   L+L
Sbjct: 265 DAYNPVPGLMEGVPSSGDYNGGFASKLMAKDLNL 298