Jatropha Genome Database

JcCB0836121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0836121.10 + phase: 1 /partial
         (65 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g02180.3                                                        57   5e-09
Glyma05g02180.4                                                        57   5e-09
Glyma05g02180.2                                                        57   5e-09
Glyma05g02180.1                                                        57   5e-09
Glyma17g09750.1                                                        53   7e-08
Glyma06g19390.2                                                        47   6e-06

>Glyma05g02180.3 
          Length = 500

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 1  SELAQPTNEIQQPAREEATKQSPP-SVFVNSEPMREDQVQNAVKISFTPKKLG 52
          SE+ Q TN  QQ AREE  KQS   SVFVNS+PMRE+Q+QNAVK    PK  G
Sbjct: 20 SEVVQATNVDQQNAREEPAKQSSTTSVFVNSQPMREEQIQNAVKFLSHPKVRG 72


>Glyma05g02180.4 
          Length = 501

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 1  SELAQPTNEIQQPAREEATKQSPP-SVFVNSEPMREDQVQNAVKISFTPKKLG 52
          SE+ Q TN  QQ AREE  KQS   SVFVNS+PMRE+Q+QNAVK    PK  G
Sbjct: 20 SEVVQATNVDQQNAREEPAKQSSTTSVFVNSQPMREEQIQNAVKFLSHPKVRG 72


>Glyma05g02180.2 
          Length = 512

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 1  SELAQPTNEIQQPAREEATKQSPP-SVFVNSEPMREDQVQNAVKISFTPKKLG 52
          SE+ Q TN  QQ AREE  KQS   SVFVNS+PMRE+Q+QNAVK    PK  G
Sbjct: 20 SEVVQATNVDQQNAREEPAKQSSTTSVFVNSQPMREEQIQNAVKFLSHPKVRG 72


>Glyma05g02180.1 
          Length = 514

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 1  SELAQPTNEIQQPAREEATKQSPP-SVFVNSEPMREDQVQNAVKISFTPKKLG 52
          SE+ Q TN  QQ AREE  KQS   SVFVNS+PMRE+Q+QNAVK    PK  G
Sbjct: 22 SEVVQATNVDQQNAREEPAKQSSTTSVFVNSQPMREEQIQNAVKFLSHPKVRG 74


>Glyma17g09750.1 
          Length = 500

 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 1  SELAQPTNEIQQPAREEATKQSPP-SVFVNSEPMREDQVQNAVKISFTPKKLG 52
          SE+ Q T   QQ AREE  KQS   SVFVNS+ MRE+Q+QNAVK    PK +G
Sbjct: 20 SEVVQATTVDQQNAREEPAKQSSTTSVFVNSQLMREEQIQNAVKFLSHPKVIG 72


>Glyma06g19390.2 
          Length = 367

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 2  ELAQPTNEIQQPAREEATKQSP-PSVFVNSEPMREDQVQNAVKISFTPKKLG 52
          E+ Q  N  Q    EE  KQS   SVFVNSEP+RE+Q+QNAVK    PK  G
Sbjct: 14 EIEQTENVDQHNRGEELGKQSSDTSVFVNSEPLREEQIQNAVKFLSHPKVRG 65