Jatropha Genome Database

JcCB0833551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0833551.10 - phase: 0 /pseudo/partial
         (174 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g32390.1                                                       145   2e-35
Glyma02g28000.1                                                       144   7e-35
Glyma10g35170.1                                                       143   1e-34

>Glyma20g32390.1 
          Length = 628

 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/86 (79%), Positives = 77/86 (89%)

Query: 48  MAEDAVDAAVKSGKLSPTNECSTQNLRLIGGDGWEPSSFTVLAQQYVRMKRSYGGKVVPG 107
           MAEDAV+AA+KSGKL+PT+ C T NLRL+GG+GWEPSSFTVLAQQY RMK +Y GKVVPG
Sbjct: 444 MAEDAVNAAIKSGKLTPTSICVTNNLRLVGGEGWEPSSFTVLAQQYKRMKSTYRGKVVPG 503

Query: 108 VMDTAAAKHLSHAYGTMAERVAAIAQ 133
           VMD+A AKHLS AYGT+AERVA IAQ
Sbjct: 504 VMDSAVAKHLSQAYGTLAERVATIAQ 529


>Glyma02g28000.1 
          Length = 630

 Score =  144 bits (362), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 79/86 (91%)

Query: 48  MAEDAVDAAVKSGKLSPTNECSTQNLRLIGGDGWEPSSFTVLAQQYVRMKRSYGGKVVPG 107
           MAEDAV++A+KSGKL+P N C T N+R++GG+GW+P SFT+L+QQY+RMK +Y GKVVPG
Sbjct: 445 MAEDAVNSAIKSGKLTPANGCITNNIRIVGGEGWDPVSFTILSQQYMRMKVTYRGKVVPG 504

Query: 108 VMDTAAAKHLSHAYGTMAERVAAIAQ 133
           VMDTA+AKHLSHAYGT+AERVAAIAQ
Sbjct: 505 VMDTASAKHLSHAYGTLAERVAAIAQ 530


>Glyma10g35170.1 
          Length = 619

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/86 (77%), Positives = 76/86 (88%)

Query: 48  MAEDAVDAAVKSGKLSPTNECSTQNLRLIGGDGWEPSSFTVLAQQYVRMKRSYGGKVVPG 107
           MAEDAV+AA+KSGKL+PT+ C T NLRL+GG+GWE SSFTVLAQQY RMK +Y GKVVPG
Sbjct: 435 MAEDAVNAAIKSGKLTPTSRCVTNNLRLVGGEGWELSSFTVLAQQYKRMKSTYSGKVVPG 494

Query: 108 VMDTAAAKHLSHAYGTMAERVAAIAQ 133
           VMD+A AKHLS AYGT+AERVA IAQ
Sbjct: 495 VMDSATAKHLSQAYGTLAERVATIAQ 520