Jatropha Genome Database

JcCB0826111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0826111.10 + phase: 0 /partial/short
         (47 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g04530.1                                                        52   1e-07
Glyma01g40810.2                                                        52   2e-07
Glyma01g40810.1                                                        51   3e-07
Glyma11g04530.2                                                        50   4e-07

>Glyma11g04530.1 
          Length = 165

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/36 (69%), Positives = 28/36 (77%), Gaps = 1/36 (2%)

Query: 1  MALRMWASSTANALKISVASKPQ-LSPYCLSRCFSS 35
          MALRMWASSTANALK+S  S+P  L P+  SRC SS
Sbjct: 1  MALRMWASSTANALKLSSVSRPHLLPPFSFSRCLSS 36


>Glyma01g40810.2 
          Length = 163

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 28/36 (77%), Gaps = 1/36 (2%)

Query: 1  MALRMWASSTANALKISVASKPQ-LSPYCLSRCFSS 35
          MALRMWASSTANALK+S  S+P  L P+  SRC SS
Sbjct: 35 MALRMWASSTANALKVSSTSRPHLLHPFSFSRCLSS 70


>Glyma01g40810.1 
          Length = 199

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/36 (69%), Positives = 28/36 (77%), Gaps = 1/36 (2%)

Query: 1  MALRMWASSTANALKISVASKPQ-LSPYCLSRCFSS 35
          MALRMWASSTANALK+S  S+P  L P+  SRC SS
Sbjct: 35 MALRMWASSTANALKVSSTSRPHLLHPFSFSRCLSS 70


>Glyma11g04530.2 
          Length = 150

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/36 (69%), Positives = 28/36 (77%), Gaps = 1/36 (2%)

Query: 1  MALRMWASSTANALKISVASKPQ-LSPYCLSRCFSS 35
          MALRMWASSTANALK+S  S+P  L P+  SRC SS
Sbjct: 1  MALRMWASSTANALKLSSVSRPHLLPPFSFSRCLSS 36