Jatropha Genome Database

JcCB0813641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0813641.10 + phase: 0 /pseudo/partial
         (166 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g16630.1                                                       186   1e-47
Glyma18g41120.1                                                       185   2e-47
Glyma07g16630.2                                                        94   6e-20

>Glyma07g16630.1 
          Length = 209

 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/125 (74%), Positives = 103/125 (82%), Gaps = 1/125 (0%)

Query: 43  LGANYLFCSFAATFSEKVTRTVRKFSPHLAAKMRPPHMPVIRGR-SAKKSVYICGQPRGV 101
           L   +L  SFA TFSEKVTRTVR+FSPHLAAKMRPP  PVIRGR S+K+++YICG+PR V
Sbjct: 85  LNIAFLNDSFAGTFSEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSSKRAIYICGRPRWV 144

Query: 102 CVFLFSAASIILWFTSGSLLYVLWAFGIGLLVTIIHASVRTPNLKARLNTFREEFRAVWR 161
            V +FS+AS  LWF S  LL VLWA  IGLL TI+HAS RTPNLKARLNTFREEFRAVWR
Sbjct: 145 FVLIFSSASFFLWFVSAGLLTVLWALAIGLLATILHASFRTPNLKARLNTFREEFRAVWR 204

Query: 162 NYSEL 166
           NYSEL
Sbjct: 205 NYSEL 209


>Glyma18g41120.1 
          Length = 170

 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/125 (74%), Positives = 103/125 (82%), Gaps = 1/125 (0%)

Query: 43  LGANYLFCSFAATFSEKVTRTVRKFSPHLAAKMRPPHMPVIRGR-SAKKSVYICGQPRGV 101
           L   +L  SFA TFSEKVTRTVR+FSPHLAAKMRPP  PVIRGR S+K+++YICG+PR V
Sbjct: 46  LSIAFLNDSFAGTFSEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSSKRAIYICGRPRWV 105

Query: 102 CVFLFSAASIILWFTSGSLLYVLWAFGIGLLVTIIHASVRTPNLKARLNTFREEFRAVWR 161
            V +FS+AS  LWF S  LL VLWA  IGLL TI+HAS RTPNLKARLNTFREEFRAVWR
Sbjct: 106 FVLIFSSASFFLWFVSAGLLTVLWALAIGLLATILHASFRTPNLKARLNTFREEFRAVWR 165

Query: 162 NYSEL 166
           NYSEL
Sbjct: 166 NYSEL 170


>Glyma07g16630.2 
          Length = 162

 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 56/69 (81%), Gaps = 1/69 (1%)

Query: 43  LGANYLFCSFAATFSEKVTRTVRKFSPHLAAKMRPPHMPVIRGR-SAKKSVYICGQPRGV 101
           L   +L  SFA TFSEKVTRTVR+FSPHLAAKMRPP  PVIRGR S+K+++YICG+PR V
Sbjct: 85  LNIAFLNDSFAGTFSEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSSKRAIYICGRPRWV 144

Query: 102 CVFLFSAAS 110
            V +FS+ S
Sbjct: 145 FVLIFSSVS 153