Jatropha Genome Database

JcCB0812861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0812861.10 - phase: 0 /partial
         (104 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g43320.1                                                       140   4e-34
Glyma01g29480.1                                                       106   6e-24
Glyma03g07470.1                                                       104   2e-23
Glyma07g18480.1                                                        80   4e-16
Glyma16g19400.1                                                        55   1e-08

>Glyma18g43320.1 
          Length = 112

 Score =  140 bits (352), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/85 (83%), Positives = 80/85 (94%)

Query: 7  RAELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYKELGHRGGET 66
          R ELD +ARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTR++QLG+EGY E+G +GG+T
Sbjct: 8  REELDEKARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRKQQLGSEGYHEMGTKGGQT 67

Query: 67 RREQIGHEGYQEMGRKGGLSTMDKS 91
          R+EQ+G EGYQEMGRKGGLSTMDKS
Sbjct: 68 RKEQMGREGYQEMGRKGGLSTMDKS 92


>Glyma01g29480.1 
          Length = 101

 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 67/92 (72%), Gaps = 21/92 (22%)

Query: 1  MAT-EQERAELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYKEL 59
          MA+ +Q + ELD RARQGETVVPGGTGGKSLEAQ+HLAEGRSRGG+TR+EQLGTE     
Sbjct: 1  MASHQQNKQELDERARQGETVVPGGTGGKSLEAQQHLAEGRSRGGKTRKEQLGTE----- 55

Query: 60 GHRGGETRREQIGHEGYQEMGRKGGLSTMDKS 91
                         GY EMGRKGGLSTMDKS
Sbjct: 56 ---------------GYHEMGRKGGLSTMDKS 72


>Glyma03g07470.1 
          Length = 105

 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 67/92 (72%), Gaps = 21/92 (22%)

Query: 1  MATEQE-RAELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYKEL 59
          MA+ Q  + ELD RARQGETVVPGGTGGKSLEAQ+HLAEGRS+GGQTR+EQLGTEGY   
Sbjct: 1  MASRQNNKQELDERARQGETVVPGGTGGKSLEAQQHLAEGRSKGGQTRKEQLGTEGY--- 57

Query: 60 GHRGGETRREQIGHEGYQEMGRKGGLSTMDKS 91
                           QEMGRKGGLST++KS
Sbjct: 58 -----------------QEMGRKGGLSTVEKS 72


>Glyma07g18480.1 
          Length = 71

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/51 (76%), Positives = 48/51 (94%)

Query: 41 SRGGQTRREQLGTEGYKELGHRGGETRREQIGHEGYQEMGRKGGLSTMDKS 91
          +RGGQTR++QLG+EGY E+G +GG+TR+EQ+G EGYQEMGRKGGLSTMDKS
Sbjct: 1  NRGGQTRKQQLGSEGYHEMGTKGGQTRKEQMGREGYQEMGRKGGLSTMDKS 51


>Glyma16g19400.1 
          Length = 65

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/31 (83%), Positives = 30/31 (96%)

Query: 61 HRGGETRREQIGHEGYQEMGRKGGLSTMDKS 91
          +RGG+TR+EQ+G EGYQEMGRKGGLSTMDKS
Sbjct: 26 NRGGQTRKEQMGREGYQEMGRKGGLSTMDKS 56