Jatropha Genome Database

JcCB0800111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0800111.10 + phase: 0 /pseudo
         (94 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g30980.1                                                        81   2e-16
Glyma20g36490.1                                                        78   3e-15

>Glyma10g30980.1 
          Length = 328

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/42 (83%), Positives = 37/42 (88%), Gaps = 3/42 (7%)

Query: 18 RSH---GNYTNPCLTMHQPWASLLVYGIKRIEGRSWPAPIRG 56
          R+H   GNY NPCLTMHQPWASLLVYGIKR+EGRSWPAPI G
Sbjct: 3  RNHSNSGNYRNPCLTMHQPWASLLVYGIKRVEGRSWPAPITG 44


>Glyma20g36490.1 
          Length = 283

 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 33/36 (91%), Positives = 34/36 (94%)

Query: 21 GNYTNPCLTMHQPWASLLVYGIKRIEGRSWPAPIRG 56
          GNY NPCLTMHQPWASLLVYGIKR+EGRSWPAPI G
Sbjct: 9  GNYRNPCLTMHQPWASLLVYGIKRVEGRSWPAPITG 44