Jatropha Genome Database

JcCB0799991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0799991.10 - phase: 0 /partial
         (112 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g08010.1                                                        74   3e-14

>Glyma13g08010.1 
          Length = 370

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 46/59 (77%)

Query: 3   VRLGTEKGSLVVKVAIVALYSLLSIFVLSNALPFTCLLLCDLTIPMGNLVVRYVEENHK 61
           VRLG +KG+ VVK A+  LY+LL  F L  ALP TC+ LC LT+P+GNLVVR+VE+N+K
Sbjct: 297 VRLGNKKGAEVVKGAVFMLYALLVAFGLIKALPLTCISLCTLTLPLGNLVVRFVEDNYK 355