Jatropha Genome Database

JcCB0779721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0779721.10 - phase: 0 
         (92 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g51050.1                                                        50   6e-07
Glyma08g27980.1                                                        47   5e-06

>Glyma18g51050.1 
          Length = 447

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 9  VACSDRSMGTGITVWDLETGDRLMHIPTCASPAHGLLCLRDQFLVASQVNKHGSVGGGAI 68
          V  +  S+  GI  WDL TG   +   +C SP+HGL+ +  +F+ +SQ+ +  S  G  +
Sbjct: 3  VVLASSSVDGGIGCWDLHTGAEQLRYKSCTSPSHGLVSVAARFIASSQLREDQSAPGSVL 62

Query: 69 F-IWQLNKVIINSIFSFNYVELALN 92
          F  W   +V + S  +     LA N
Sbjct: 63 FWSWSKPQVEVKSFPAEQIKPLATN 87


>Glyma08g27980.1 
          Length = 470

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 3   KGREALVACSDRSMGTGITVWDLETGDRLMHIPTCASPAHGLLCLRDQFLVASQVNKHGS 62
           K R   V  +  S+  GI  WDL TG   +   +C SP+HGL+ +  +F+ +SQ+    +
Sbjct: 18  KRRRMEVVLASSSVDGGIGCWDLHTGAEQLRYKSCTSPSHGLISVGARFIASSQLRDDPA 77

Query: 63  VGGGAIF-IWQLNKVIINSIFSFNYVELALN 92
             G  ++  W   +V + S  +     +A N
Sbjct: 78  ATGYVLYWSWSKPQVEVKSFPAEQIKPIAAN 108