Jatropha Genome Database

JcCB0771211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0771211.10 + phase: 0 /pseudo/partial
         (114 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g39910.1                                                        86   1e-17
Glyma18g18550.1                                                        85   1e-17
Glyma01g03880.1                                                        81   3e-16
Glyma02g03810.1                                                        75   2e-14
Glyma19g01410.1                                                        57   4e-09

>Glyma08g39910.1 
          Length = 515

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 36/41 (87%), Positives = 39/41 (95%)

Query: 2   MGYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGTGFPFG 42
           + Y+GSSCSLLVIDRGNRAIREIQLHFDDCAYQYG+GFP G
Sbjct: 222 VAYVGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSGFPLG 262


>Glyma18g18550.1 
          Length = 453

 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 36/40 (90%), Positives = 38/40 (95%)

Query: 4   YIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGTGFPFGC 43
           Y+GSSCSLLVIDRGNRAIREIQLHFDDCAYQYG+GFP G 
Sbjct: 161 YVGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSGFPLGI 200


>Glyma01g03880.1 
          Length = 507

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 35/42 (83%), Positives = 37/42 (88%)

Query: 4   YIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGTGFPFGCNV 45
           Y+GSSCSLLVIDRGN+AIREIQLHFDDCAYQY  GFP G  V
Sbjct: 206 YVGSSCSLLVIDRGNQAIREIQLHFDDCAYQYENGFPLGIAV 247


>Glyma02g03810.1 
          Length = 509

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 34/40 (85%)

Query: 4   YIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGTGFPFGC 43
           YIGSSCSLLVIDRGN+AIREIQLHFDDCAYQY  G   G 
Sbjct: 206 YIGSSCSLLVIDRGNQAIREIQLHFDDCAYQYENGLTLGI 245


>Glyma19g01410.1 
          Length = 536

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/29 (82%), Positives = 26/29 (89%)

Query: 4   YIGSSCSLLVIDRGNRAIREIQLHFDDCA 32
           Y+GSSCSLLV+DRGN AIREIQLH DDC 
Sbjct: 210 YVGSSCSLLVVDRGNHAIREIQLHQDDCT 238