Jatropha Genome Database

JcCB0735811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0735811.10 + phase: 0 
         (127 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g28420.2                                                        89   1e-18
Glyma20g28420.1                                                        88   2e-18

>Glyma20g28420.2 
          Length = 278

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 51/62 (82%), Gaps = 3/62 (4%)

Query: 61  DNGSTVTSSPIESVGREGRIGEVKRVTRETNVSVNINLDGTGIADSSTGIPFLDHMLDVV 120
           DN S  T+ PI+S   + RIGEVKRVT+ETNVSV INLDG+G+ADSSTGIPFLDHMLD +
Sbjct: 67  DNASATTTLPIDS---DARIGEVKRVTKETNVSVKINLDGSGVADSSTGIPFLDHMLDQL 123

Query: 121 LS 122
            S
Sbjct: 124 AS 125


>Glyma20g28420.1 
          Length = 369

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 51/62 (82%), Gaps = 3/62 (4%)

Query: 61  DNGSTVTSSPIESVGREGRIGEVKRVTRETNVSVNINLDGTGIADSSTGIPFLDHMLDVV 120
           DN S  T+ PI+S   + RIGEVKRVT+ETNVSV INLDG+G+ADSSTGIPFLDHMLD +
Sbjct: 67  DNASATTTLPIDS---DARIGEVKRVTKETNVSVKINLDGSGVADSSTGIPFLDHMLDQL 123

Query: 121 LS 122
            S
Sbjct: 124 AS 125