Jatropha Genome Database

JcCB0733251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0733251.10 + phase: 0 /pseudo/partial
         (164 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g01740.1                                                       139   1e-33
Glyma01g42890.1                                                        49   2e-06
Glyma19g01310.1                                                        49   3e-06
Glyma11g11720.1                                                        48   4e-06
Glyma13g23910.1                                                        48   4e-06
Glyma18g52260.1                                                        47   8e-06

>Glyma10g01740.1 
          Length = 1285

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 73/105 (69%), Gaps = 9/105 (8%)

Query: 50   LYNTHAWAEKSFENLLSRAEEIVEDFTPPSDTCNSDDTACQACGSRDRGDVMLICGDESG 109
            LY THAWAE+SF+ L S+AEEIVE+   P D+          CGSRDRGDVMLICGDESG
Sbjct: 1180 LYGTHAWAERSFDKLKSKAEEIVEELVAPEDSV---------CGSRDRGDVMLICGDESG 1230

Query: 110  SIGCGIGMHMDCFDPPLENIPEEDWFCPNCXXXXXXXXXAKRRRK 154
            S+GCGIG H+DC DPPL ++PEEDWFCP C           +R+K
Sbjct: 1231 SVGCGIGTHIDCCDPPLTHVPEEDWFCPKCSSNRNCSNNPSKRKK 1275


>Glyma01g42890.1 
          Length = 1362

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 86  DTACQACGSRDRGDVMLICGDESGSIGCGIGMHMDCFDPPLENIPEEDWFCPNC 139
           D  C+ C S   G++ML+C        C  G H  C  PPLE+IP  +W+C NC
Sbjct: 182 DQICEQCKSGLHGELMLLCD------RCDKGWHTYCLSPPLEHIPPGNWYCFNC 229


>Glyma19g01310.1 
          Length = 2092

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 85   DDTACQACGSRDRGDVMLICGDESGSIGCGIGMHMDCFDPPLENIPEEDWFCPNCXXXXX 144
            D+  C+ CG     D +L+C        C    H  C +PPL  IPE +W+CP+C     
Sbjct: 1225 DEGVCKVCGIDRDDDSVLLCDT------CDAEYHTYCLNPPLARIPEGNWYCPSCVDGKR 1278

Query: 145  XXXXAKRRRKGTSSLNTKYF 164
                   R K      +K F
Sbjct: 1279 ATQDVTERTKIIGKRQSKKF 1298


>Glyma11g11720.1 
          Length = 1445

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 51  YNTHAWAEKSFENLLS---RAEEIVEDFTPPSDTCNSDDTACQACGSRDRGDVMLICGDE 107
           Y+ H    +  E L+    RAE   ED +  SD    D   C  CG   R D++ IC   
Sbjct: 233 YSAHDGLHEKVEELIKSSGRAEPQSEDESDESDVVEHDVKVCDICGDAGREDLLAICS-- 290

Query: 108 SGSIGCGIGM-HMDCFDPPLENIPEEDWFCPNC 139
                C  G  H  C    LE +PE DW C  C
Sbjct: 291 ----RCSDGAEHTYCMREMLEKVPEGDWLCEEC 319


>Glyma13g23910.1 
          Length = 2142

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 85   DDTACQACGSRDRGDVMLICGDESGSIGCGIGMHMDCFDPPLENIPEEDWFCPNCXXXXX 144
            D+  C+ CG     D +L+C        C    H  C +PPL  IPE +W+CP+C     
Sbjct: 1288 DEGVCKVCGIDRDDDSVLLCDT------CDAEYHTYCLNPPLARIPEGNWYCPSCVVGKH 1341

Query: 145  XXXXAKRRRKGTSSLNTKYF 164
                   R +      +K F
Sbjct: 1342 ATQNVTERTQVIGKRQSKKF 1361


>Glyma18g52260.1 
          Length = 334

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 77  PPSDTCNSDDTACQACGSRDRGDVMLICGDESGSIGCGIGMHMDCFDPPLENIPEEDWFC 136
           P S +  +DD +C+ CG       +L+C        C  G H+ C  P L ++P+  WFC
Sbjct: 13  PKSSSTLNDDVSCEECGGGHSPSKLLLCDK------CDRGYHLFCLRPILPSVPKGSWFC 66

Query: 137 PNC 139
           P+C
Sbjct: 67  PSC 69