Jatropha Genome Database

JcCB0704851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0704851.10 + phase: 0 
         (78 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g02680.1                                                       129   8e-31
Glyma04g00760.1                                                       127   3e-30
Glyma11g10390.1                                                       126   4e-30
Glyma12g02680.1                                                       125   9e-30
Glyma06g00780.1                                                       125   9e-30
Glyma04g02650.1                                                       107   2e-24
Glyma03g20630.1                                                        61   3e-10
Glyma16g11830.1                                                        57   4e-09
Glyma03g20420.1                                                        56   8e-09

>Glyma06g02680.1 
          Length = 272

 Score =  129 bits (323), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 68/75 (90%)

Query: 1  MKASKRPIHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGI 60
          MK SKRPIHAV TW+RRQPPK+K FLAV+SG+ AL+FLR+ VHDHD+LFVA+E VHA+GI
Sbjct: 1  MKGSKRPIHAVTTWVRRQPPKMKAFLAVLSGLAALLFLRIFVHDHDSLFVAAELVHALGI 60

Query: 61 SVLIYKLMKEKTCAG 75
          SVLIYKL +EKTCAG
Sbjct: 61 SVLIYKLTREKTCAG 75


>Glyma04g00760.1 
          Length = 272

 Score =  127 bits (319), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 56/75 (74%), Positives = 68/75 (90%)

Query: 1  MKASKRPIHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGI 60
          M++ K+ IHA+ TW+RRQPPK+K FLAVVSG+ ALV LR +VHDHDNLFVA+EAVH++GI
Sbjct: 1  MRSGKKSIHAITTWVRRQPPKVKAFLAVVSGMAALVLLRFIVHDHDNLFVAAEAVHSLGI 60

Query: 61 SVLIYKLMKEKTCAG 75
          SVLIYKL+KEKTCAG
Sbjct: 61 SVLIYKLIKEKTCAG 75


>Glyma11g10390.1 
          Length = 272

 Score =  126 bits (317), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/75 (76%), Positives = 66/75 (88%)

Query: 1  MKASKRPIHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGI 60
          M+  +  IHAV TW+RRQPPK+K FLAVVSG+ ALV LR +VHDHDNLFVA+EAVH++GI
Sbjct: 1  MRPQRTSIHAVTTWVRRQPPKVKAFLAVVSGMAALVLLRFIVHDHDNLFVAAEAVHSLGI 60

Query: 61 SVLIYKLMKEKTCAG 75
          SVLIYKLMKEKTCAG
Sbjct: 61 SVLIYKLMKEKTCAG 75


>Glyma12g02680.1 
          Length = 272

 Score =  125 bits (315), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 56/75 (74%), Positives = 66/75 (88%)

Query: 1  MKASKRPIHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGI 60
          M+  +  IHAV TW+RRQPPK+K FLAVVSG+ ALV LR +VHDHDNLFVA+EAVH++GI
Sbjct: 1  MRPQRTSIHAVTTWVRRQPPKVKAFLAVVSGMAALVLLRFIVHDHDNLFVAAEAVHSLGI 60

Query: 61 SVLIYKLMKEKTCAG 75
          SVLIYKLMKE+TCAG
Sbjct: 61 SVLIYKLMKERTCAG 75


>Glyma06g00780.1 
          Length = 168

 Score =  125 bits (314), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 67/75 (89%)

Query: 1  MKASKRPIHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGI 60
          M++ ++ IHA+ TW+RRQPPK+K FLAVVSG+ ALV LR +VHDHDNLFV +EAVH++GI
Sbjct: 1  MRSGRKSIHAITTWVRRQPPKVKAFLAVVSGMAALVLLRFIVHDHDNLFVTAEAVHSLGI 60

Query: 61 SVLIYKLMKEKTCAG 75
          SVLIYKL+KEKTCAG
Sbjct: 61 SVLIYKLIKEKTCAG 75


>Glyma04g02650.1 
          Length = 272

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 68/75 (90%)

Query: 1  MKASKRPIHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGI 60
          MK SKRPIHAV TW+RRQPPKIK FLAV+S + AL+FLR+VVHDHD+LFVA+E VHA+GI
Sbjct: 1  MKGSKRPIHAVTTWVRRQPPKIKAFLAVLSALAALLFLRIVVHDHDSLFVAAEFVHALGI 60

Query: 61 SVLIYKLMKEKTCAG 75
          SVLIYKL KEKTCAG
Sbjct: 61 SVLIYKLTKEKTCAG 75


>Glyma03g20630.1 
          Length = 273

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%)

Query: 7  PIHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGISVLIYK 66
          P++ +   +R+ P K+K F  V+  + ALV L++ + +H   F+ASE VH  GI  LIYK
Sbjct: 10 PVNVLIERLRKVPMKVKIFCGVLFAVFALVALKLTITNHYYFFIASETVHVAGIIALIYK 69

Query: 67 LMKEKTCAG 75
          L   KTC G
Sbjct: 70 LFALKTCTG 78


>Glyma16g11830.1 
          Length = 256

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 42/75 (56%)

Query: 2  KASKRPIHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGIS 61
          K    P++     +R+   K+K FL V+  + AL+ L++VV  H   F+ASE  HA G  
Sbjct: 4  KMGNSPVNISFEKLRKLSMKVKIFLGVLFALCALLSLKLVVKRHYYFFIASEVAHAAGTI 63

Query: 62 VLIYKLMKEKTCAGK 76
           L+YK    KTCAG+
Sbjct: 64 ALVYKPFSLKTCAGR 78


>Glyma03g20420.1 
          Length = 272

 Score = 56.2 bits (134), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 42/74 (56%)

Query: 2  KASKRPIHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGIS 61
          K    P++ +   +R+   K+K  L V+  + ALV L+++V  H   F+ASE  HA G  
Sbjct: 4  KIGNSPLNVLFERLRKLSMKVKILLGVLFALCALVALKLIVKRHYYFFIASEVAHAAGTI 63

Query: 62 VLIYKLMKEKTCAG 75
           L+YKL   KTC+G
Sbjct: 64 ALVYKLFALKTCSG 77