Jatropha Genome Database

JcCB0701471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0701471.10 + phase: 0 /partial/short
         (30 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g18080.1                                                        66   9e-12
Glyma03g08250.1                                                        65   1e-11
Glyma03g08250.2                                                        65   1e-11
Glyma18g42920.1                                                        65   2e-11
Glyma07g18080.2                                                        63   7e-11
Glyma13g24930.1                                                        62   2e-10
Glyma07g31510.1                                                        62   2e-10
Glyma15g07890.2                                                        59   1e-09
Glyma15g07890.1                                                        59   1e-09
Glyma13g31450.1                                                        57   3e-09
Glyma18g07090.1                                                        53   8e-08

>Glyma07g18080.1 
          Length = 239

 Score = 65.9 bits (159), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/29 (96%), Positives = 29/29 (100%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          +RLSYSPAAQFFLFLVQWTDCHLAGALGF
Sbjct: 35 LRLSYSPAAQFFLFLVQWTDCHLAGALGF 63


>Glyma03g08250.1 
          Length = 251

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/29 (93%), Positives = 27/29 (93%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MRLSYSPAAQFFLFLVQWTDCHLAG LG 
Sbjct: 37 MRLSYSPAAQFFLFLVQWTDCHLAGVLGL 65


>Glyma03g08250.2 
          Length = 215

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/29 (93%), Positives = 27/29 (93%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MRLSYSPAAQFFLFLVQWTDCHLAG LG 
Sbjct: 1  MRLSYSPAAQFFLFLVQWTDCHLAGVLGL 29


>Glyma18g42920.1 
          Length = 243

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/29 (93%), Positives = 28/29 (96%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MRLSYSPAAQFFLFLV+WTDCHLAGALG 
Sbjct: 35 MRLSYSPAAQFFLFLVKWTDCHLAGALGL 63


>Glyma07g18080.2 
          Length = 113

 Score = 62.8 bits (151), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/29 (96%), Positives = 29/29 (100%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          +RLSYSPAAQFFLFLVQWTDCHLAGALGF
Sbjct: 54 LRLSYSPAAQFFLFLVQWTDCHLAGALGF 82


>Glyma13g24930.1 
          Length = 247

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/29 (86%), Positives = 26/29 (89%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MR+SYSPAA  FLFLVQWTDCHLAGALG 
Sbjct: 42 MRMSYSPAAHLFLFLVQWTDCHLAGALGL 70


>Glyma07g31510.1 
          Length = 247

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/29 (86%), Positives = 26/29 (89%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MR+SYSPAA  FLFLVQWTDCHLAGALG 
Sbjct: 42 MRMSYSPAAHLFLFLVQWTDCHLAGALGL 70


>Glyma15g07890.2 
          Length = 247

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/29 (82%), Positives = 26/29 (89%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MR+SYSPAA  FLFLVQWTDC+LAGALG 
Sbjct: 42 MRMSYSPAAHLFLFLVQWTDCNLAGALGL 70


>Glyma15g07890.1 
          Length = 404

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/29 (82%), Positives = 26/29 (89%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MR+SYSPAA  FLFLVQWTDC+LAGALG 
Sbjct: 42 MRMSYSPAAHLFLFLVQWTDCNLAGALGL 70


>Glyma13g31450.1 
          Length = 247

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/29 (79%), Positives = 25/29 (86%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MR+SYSPAA  FLF VQWTDC+LAGALG 
Sbjct: 42 MRMSYSPAAHLFLFFVQWTDCNLAGALGL 70


>Glyma18g07090.1 
          Length = 243

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/29 (79%), Positives = 24/29 (82%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MR+SYSPAA  FLFLVQWTD  LAGALG 
Sbjct: 38 MRISYSPAAPLFLFLVQWTDYRLAGALGL 66