Jatropha Genome Database

JcCB0694151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0694151.10 + phase: 1 /partial
         (124 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g44090.1                                                       189   4e-49
Glyma18g54020.1                                                       182   6e-47

>Glyma10g44090.1 
          Length = 254

 Score =  189 bits (481), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 109/126 (86%), Gaps = 2/126 (1%)

Query: 1   LMVAATLVLLCTRPPEVAIFGQVPWLLTVPSILIIGREITMSAVREWAASQNSKLLEAVA 60
           LMVAATLVLLCTRP +  +FGQ PWLLT+P+I IIGREITMSAVREWAASQ+SKLLEAVA
Sbjct: 129 LMVAATLVLLCTRPLDGGVFGQAPWLLTIPAIAIIGREITMSAVREWAASQDSKLLEAVA 188

Query: 61  VNNLGKWKTATQMTALTILLATRD-SSLGGPGISVAS-VVLLYISAGLSVWSLAMYMSKI 118
           VNNLGKWKTATQMTALTILLATRD S  GG  I V S V LLY SAGL++WSL +YM KI
Sbjct: 189 VNNLGKWKTATQMTALTILLATRDWSHGGGAAIVVGSGVALLYTSAGLALWSLVVYMKKI 248

Query: 119 WRVLLK 124
           WRVLL+
Sbjct: 249 WRVLLR 254


>Glyma18g54020.1 
          Length = 206

 Score =  182 bits (463), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 95/125 (76%), Positives = 106/125 (84%), Gaps = 1/125 (0%)

Query: 1   LMVAATLVLLCTRPPEVAIFGQVPWLLTVPSILIIGREITMSAVREWAASQNSKLLEAVA 60
           LMV+ATLVLLCTRP EVA+F QVPWLL +PSI IIGREITMSA+REWAASQ SKLLE VA
Sbjct: 82  LMVSATLVLLCTRPLEVAVFRQVPWLLIIPSITIIGREITMSALREWAASQGSKLLEVVA 141

Query: 61  VNNLGKWKTATQMTALTILLATRDSSLGGPGISVAS-VVLLYISAGLSVWSLAMYMSKIW 119
           VNNLGKWKTA+QM AL ILLATRD S GGP I V S VVLLYISAGL++WS  +YM +I 
Sbjct: 142 VNNLGKWKTASQMVALIILLATRDCSRGGPAILVGSGVVLLYISAGLALWSFVVYMREIC 201

Query: 120 RVLLK 124
           +VL +
Sbjct: 202 KVLRR 206