Jatropha Genome Database

JcCB0693041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0693041.10 + phase: 0 /pseudo/partial
         (271 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g36730.1                                                       331   5e-91
Glyma12g33760.1                                                       331   6e-91
Glyma12g14420.1                                                       319   2e-87
Glyma06g43550.2                                                       224   5e-59
Glyma06g43550.1                                                       197   8e-51
Glyma07g28950.1                                                        99   5e-21
Glyma15g22080.1                                                        64   2e-10
Glyma18g42720.1                                                        55   6e-08
Glyma04g35250.1                                                        51   1e-06

>Glyma13g36730.1 
          Length = 586

 Score =  331 bits (849), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 161/185 (87%), Positives = 169/185 (91%)

Query: 87  VRGGRDLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDITVKIGLRKGSRS 146
           V+GGRDLF LLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDI VKIGLRKGSRS
Sbjct: 98  VKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSRS 157

Query: 147 FAEARAAGFTEENGTSGDIWETISGSDLVMLLISDAAQADNYEKIFSYMKPNSIXXXXXX 206
           FAEARAAGF+EENGT GDIWET+SGSDLVMLLISD+AQADNYEKI S+MKPNSI      
Sbjct: 158 FAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSILGLSHG 217

Query: 207 XXXXXXQSMGIDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA 266
                 QS+G+DFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA
Sbjct: 218 FLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRA 277

Query: 267 TDVAL 271
           TDVAL
Sbjct: 278 TDVAL 282


>Glyma12g33760.1 
          Length = 586

 Score =  331 bits (848), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 161/185 (87%), Positives = 169/185 (91%)

Query: 87  VRGGRDLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDITVKIGLRKGSRS 146
           V+GGRDLF LLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDI VKIGLRKGSRS
Sbjct: 98  VKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSRS 157

Query: 147 FAEARAAGFTEENGTSGDIWETISGSDLVMLLISDAAQADNYEKIFSYMKPNSIXXXXXX 206
           FAEARAAGF+EENGT GDIWET+SGSDLVMLLISD+AQADNYEKI S+MKPNSI      
Sbjct: 158 FAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSILGLSHG 217

Query: 207 XXXXXXQSMGIDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA 266
                 QS+G+DFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA
Sbjct: 218 FLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRA 277

Query: 267 TDVAL 271
           TDVAL
Sbjct: 278 TDVAL 282


>Glyma12g14420.1 
          Length = 576

 Score =  319 bits (817), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 157/185 (84%), Positives = 166/185 (89%)

Query: 87  VRGGRDLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDITVKIGLRKGSRS 146
           V+GGRDLF LL  AFKGIKQIGVIGWGSQGPAQAQNLRDSLA+AKSDI VK+GLRKGSRS
Sbjct: 87  VKGGRDLFPLLQGAFKGIKQIGVIGWGSQGPAQAQNLRDSLADAKSDIVVKVGLRKGSRS 146

Query: 147 FAEARAAGFTEENGTSGDIWETISGSDLVMLLISDAAQADNYEKIFSYMKPNSIXXXXXX 206
           F EARAAGF+EENGT GDIWETISGSDLV+LLISDAAQADNYEKIFS+MKPNSI      
Sbjct: 147 FNEARAAGFSEENGTLGDIWETISGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHG 206

Query: 207 XXXXXXQSMGIDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA 266
                 QS+G+DFPK+ SVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA
Sbjct: 207 FLLGHLQSIGLDFPKHFSVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA 266

Query: 267 TDVAL 271
           TDVAL
Sbjct: 267 TDVAL 271


>Glyma06g43550.2 
          Length = 475

 Score =  224 bits (572), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 122/169 (72%), Positives = 128/169 (75%), Gaps = 18/169 (10%)

Query: 115 QGPAQAQNLRDSLAEAKSDITVKIGLRKGSRSFAEARAAGFTEENGTSGDIW-------- 166
           QGPAQAQNLRDSLA+AKSDI VKIGLRKGS    EARAAGF+EENGT GDIW        
Sbjct: 32  QGPAQAQNLRDSLADAKSDIVVKIGLRKGSLLINEARAAGFSEENGTLGDIWVSEENGTL 91

Query: 167 ----ETISGSDLVMLLISDAAQADNYEKIFSYMKPNSIXXXXXXXXXXXXQSMGIDFPKN 222
               ETISGSDLV+LLISDAAQADNYEKIFS+MKPNSI            QSMG+DFPK+
Sbjct: 92  GDIWETISGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSMGLDFPKH 151

Query: 223 ISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVAL 271
            SVIAVCPKGMGPSVRRLYVQGKEINGAGINS          RATDVAL
Sbjct: 152 FSVIAVCPKGMGPSVRRLYVQGKEINGAGINSR------CGWRATDVAL 194


>Glyma06g43550.1 
          Length = 488

 Score =  197 bits (502), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 108/162 (66%), Positives = 114/162 (70%), Gaps = 41/162 (25%)

Query: 115 QGPAQAQNLRDSLAEAKSDITVKIGLRKGSRSFAEARAAGF------------TEENGTS 162
           +GPAQAQNLRDSLA+AKSDI VKIGLRKGS    EARAAGF            +EENGT 
Sbjct: 88  EGPAQAQNLRDSLADAKSDIVVKIGLRKGSLLINEARAAGFSEENGTLGDIWVSEENGTL 147

Query: 163 GDIWETISGSDLVMLLISDAAQADNYEKIFSYMKPNSIXXXXXXXXXXXXQSMGIDFPKN 222
           GDIWETISGSDLV+LLISDAA                             QSMG+DFPK+
Sbjct: 148 GDIWETISGSDLVLLLISDAA-----------------------------QSMGLDFPKH 178

Query: 223 ISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 264
            SVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG
Sbjct: 179 FSVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 220


>Glyma07g28950.1 
          Length = 73

 Score = 99.0 bits (245), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/72 (68%), Positives = 51/72 (70%)

Query: 185 ADNYEKIFSYMKPNSIXXXXXXXXXXXXQSMGIDFPKNISVIAVCPKGMGPSVRRLYVQG 244
           ADNYEKI SYMKPN I            QSMG+DFPK+ SVI VCPK MG SVRR YVQG
Sbjct: 1   ADNYEKICSYMKPNRIPGLSHGFLLGHLQSMGLDFPKHFSVIIVCPKSMGLSVRRPYVQG 60

Query: 245 KEINGAGINSSF 256
           KEING  INSSF
Sbjct: 61  KEINGVVINSSF 72


>Glyma15g22080.1 
          Length = 49

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/49 (63%), Positives = 39/49 (79%)

Query: 136 VKIGLRKGSRSFAEARAAGFTEENGTSGDIWETISGSDLVMLLISDAAQ 184
           ++IGL+KGS SF EAR AGFTEENG   DI ++I  SD+V+L ISDAA+
Sbjct: 1   MEIGLKKGSPSFNEARGAGFTEENGILADICQSILSSDVVLLFISDAAE 49


>Glyma18g42720.1 
          Length = 177

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 40/57 (70%), Gaps = 5/57 (8%)

Query: 130 AKSDITVKIGLRKGSRSFAEARAAGFTEENGTSGDIWETISGSDLVMLLISDAAQAD 186
           ++SDI VK  L     S+A    AGF+EENGT GDIWET+S SD V+LLISD+ Q +
Sbjct: 65  SRSDIVVK-WLNNCYNSWA----AGFSEENGTLGDIWETVSVSDPVILLISDSTQIE 116


>Glyma04g35250.1 
          Length = 184

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 23/25 (92%)

Query: 247 INGAGINSSFAVHQDVDGRATDVAL 271
           ING GINSSF VHQDVDGRATDVAL
Sbjct: 1   INGVGINSSFLVHQDVDGRATDVAL 25