Jatropha Genome Database

JcCB0645811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0645811.10 - phase: 0 /pseudo
         (103 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g06280.1                                                       138   1e-33
Glyma16g25310.1                                                       136   4e-33
Glyma16g25310.2                                                       136   5e-33
Glyma17g36950.1                                                       123   4e-29
Glyma14g08070.1                                                       121   2e-28
Glyma13g28440.1                                                        47   6e-06
Glyma13g28450.1                                                        47   7e-06

>Glyma02g06280.1 
          Length = 487

 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/93 (76%), Positives = 76/93 (81%), Gaps = 3/93 (3%)

Query: 1  MTSREEGDDG--LRKPFLHTGSWYKMGSRQSSIMGSSTQ-IRDGAVSVVLCVLIVALGPI 57
          M+ REE  D   L+KPFLHTGSWYKMGSRQSSIMGSST  IRDGAVSV+ CVLIVALGPI
Sbjct: 1  MSFREESGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTHVIRDGAVSVLFCVLIVALGPI 60

Query: 58 QFGFTCGYSSPTQAEIIKDLKLSISEVRLIGFL 90
          QFGFTCGYSSPTQ  I++DL LSISE    G L
Sbjct: 61 QFGFTCGYSSPTQGAIVRDLNLSISEFSFFGSL 93


>Glyma16g25310.1 
          Length = 484

 Score =  136 bits (343), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 74/89 (83%), Gaps = 2/89 (2%)

Query: 4  REEGDD-GLRKPFLHTGSWYKMGSRQSSIMGSSTQ-IRDGAVSVVLCVLIVALGPIQFGF 61
           E GD   L+KPFLHTGSWYKMGSRQSSIMGSSTQ IRDGAVSV+ CVLIVALGPIQFGF
Sbjct: 2  EESGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTQVIRDGAVSVLFCVLIVALGPIQFGF 61

Query: 62 TCGYSSPTQAEIIKDLKLSISEVRLIGFL 90
          TCGYSSPTQ  I++DL LSISE    G L
Sbjct: 62 TCGYSSPTQGAIVRDLNLSISEFSFFGSL 90


>Glyma16g25310.2 
          Length = 461

 Score =  136 bits (342), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 74/89 (83%), Gaps = 2/89 (2%)

Query: 4  REEGDD-GLRKPFLHTGSWYKMGSRQSSIMGSSTQ-IRDGAVSVVLCVLIVALGPIQFGF 61
           E GD   L+KPFLHTGSWYKMGSRQSSIMGSSTQ IRDGAVSV+ CVLIVALGPIQFGF
Sbjct: 2  EESGDARDLQKPFLHTGSWYKMGSRQSSIMGSSTQVIRDGAVSVLFCVLIVALGPIQFGF 61

Query: 62 TCGYSSPTQAEIIKDLKLSISEVRLIGFL 90
          TCGYSSPTQ  I++DL LSISE    G L
Sbjct: 62 TCGYSSPTQGAIVRDLNLSISEFSFFGSL 90


>Glyma17g36950.1 
          Length = 486

 Score =  123 bits (308), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 72/92 (78%), Gaps = 2/92 (2%)

Query: 1  MTSREEGDDG--LRKPFLHTGSWYKMGSRQSSIMGSSTQIRDGAVSVVLCVLIVALGPIQ 58
          M+ RE+ ++G  L+KPFLHTGSWY+M  RQSS+ GS+  IRD ++SV  CVLIVALGPIQ
Sbjct: 1  MSLREDNEEGRDLKKPFLHTGSWYRMSGRQSSVFGSTQAIRDSSISVFACVLIVALGPIQ 60

Query: 59 FGFTCGYSSPTQAEIIKDLKLSISEVRLIGFL 90
          FGFT GY+SPTQ+ II DL LS+SE  L G L
Sbjct: 61 FGFTAGYTSPTQSAIINDLGLSVSEFSLFGSL 92


>Glyma14g08070.1 
          Length = 486

 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 71/92 (77%), Gaps = 2/92 (2%)

Query: 1  MTSREEGDDG--LRKPFLHTGSWYKMGSRQSSIMGSSTQIRDGAVSVVLCVLIVALGPIQ 58
          M+ RE+  +G  L+KPFLHTGSWY+M  RQSS+ GS+  IRD ++SV  CVLIVALGPIQ
Sbjct: 1  MSLREDNVEGRDLKKPFLHTGSWYRMSGRQSSVFGSTQAIRDSSISVFACVLIVALGPIQ 60

Query: 59 FGFTCGYSSPTQAEIIKDLKLSISEVRLIGFL 90
          FGFT GY+SPTQ+ II DL LS+SE  L G L
Sbjct: 61 FGFTAGYTSPTQSAIINDLGLSVSEFSLFGSL 92


>Glyma13g28440.1 
          Length = 483

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 32 MGSSTQIRDGAVSVVLCVLIVAL-GPIQFGFTCGYSSPTQAEIIKDLKLSISEVRLIGFL 90
          +GS   + +G++ +VL   +VA+ G   FG   GYSSPTQA I +DL LS++E  + G L
Sbjct: 29 VGSDKSVENGSIGMVLLSTLVAVCGSFTFGNCVGYSSPTQAAIREDLSLSLAEFSMFGSL 88


>Glyma13g28450.1 
          Length = 472

 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 33 GSSTQIRDGAVSVVLCVLIVAL-GPIQFGFTCGYSSPTQAEIIKDLKLSISEVRLIGFL 90
          GS   +++G++ +VL   +VA+ G   FG   GYS+PTQA I  DL LS++E  + G L
Sbjct: 32 GSDKSVKNGSIGMVLLSTLVAVCGSFTFGTCVGYSAPTQAAIRADLNLSLAEFSMFGSL 90