Jatropha Genome Database

JcCB0643441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0643441.10 - phase: 0 /partial
         (113 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g12920.1                                                       142   5e-35
Glyma12g05050.1                                                       129   9e-31
Glyma12g05050.2                                                       123   3e-29
Glyma12g05050.3                                                       122   6e-29
Glyma11g12920.2                                                       117   2e-27

>Glyma11g12920.1 
          Length = 580

 Score =  142 bits (359), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 73/115 (63%), Positives = 86/115 (74%), Gaps = 16/115 (13%)

Query: 1   PFEQYADDKVWKIRMQVINLTAVTDTLCKKMYECIESDLLGSLQLGTHNIAPYKSKGIEK 60
           PFE ++DDKV +IRMQ++NL+ + D LC+KMYECIE+DLLGSL LG H+IAPYKSKGIE+
Sbjct: 457 PFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLNLGIHSIAPYKSKGIER 516

Query: 61  ASELSSCWSNKVNATHKFLTSDGNASGGISELDRP-----SDDSGCSSRKRARKE 110
           ASELS  W+NKVN T           G   ELDRP     SDD+GCSSRKRARKE
Sbjct: 517 ASELSVGWNNKVNNT-----------GVTEELDRPSGSGSSDDNGCSSRKRARKE 560


>Glyma12g05050.1 
          Length = 580

 Score =  129 bits (323), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 73/115 (63%), Positives = 86/115 (74%), Gaps = 16/115 (13%)

Query: 1   PFEQYADDKVWKIRMQVINLTAVTDTLCKKMYECIESDLLGSLQLGTHNIAPYKSKGIEK 60
           PFE ++DDKV +IRMQ++NL+ + D LC+KMYECIE+DLLGSL LG H+IAPYKSKGIE+
Sbjct: 457 PFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLNLGIHSIAPYKSKGIER 516

Query: 61  ASELSSCWSNKVNATHKFLTSDGNASGGISELDRP-----SDDSGCSSRKRARKE 110
           ASELS CW+NKVN T           G   ELDRP     S+DSGCSSRKR RKE
Sbjct: 517 ASELSVCWNNKVNNT-----------GVTEELDRPSGSGSSEDSGCSSRKRPRKE 560


>Glyma12g05050.2 
          Length = 541

 Score =  123 bits (309), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/79 (70%), Positives = 68/79 (86%)

Query: 1   PFEQYADDKVWKIRMQVINLTAVTDTLCKKMYECIESDLLGSLQLGTHNIAPYKSKGIEK 60
           PFE ++DDKV +IRMQ++NL+ + D LC+KMYECIE+DLLGSL LG H+IAPYKSKGIE+
Sbjct: 457 PFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLNLGIHSIAPYKSKGIER 516

Query: 61  ASELSSCWSNKVNATHKFL 79
           ASELS CW+NKVN T K L
Sbjct: 517 ASELSVCWNNKVNNTGKCL 535


>Glyma12g05050.3 
          Length = 532

 Score =  122 bits (307), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 66/75 (88%)

Query: 1   PFEQYADDKVWKIRMQVINLTAVTDTLCKKMYECIESDLLGSLQLGTHNIAPYKSKGIEK 60
           PFE ++DDKV +IRMQ++NL+ + D LC+KMYECIE+DLLGSL LG H+IAPYKSKGIE+
Sbjct: 457 PFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLNLGIHSIAPYKSKGIER 516

Query: 61  ASELSSCWSNKVNAT 75
           ASELS CW+NKVN T
Sbjct: 517 ASELSVCWNNKVNNT 531


>Glyma11g12920.2 
          Length = 532

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/75 (70%), Positives = 65/75 (86%)

Query: 1   PFEQYADDKVWKIRMQVINLTAVTDTLCKKMYECIESDLLGSLQLGTHNIAPYKSKGIEK 60
           PFE ++DDKV +IRMQ++NL+ + D LC+KMYECIE+DLLGSL LG H+IAPYKSKGIE+
Sbjct: 457 PFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLNLGIHSIAPYKSKGIER 516

Query: 61  ASELSSCWSNKVNAT 75
           ASELS  W+NKVN T
Sbjct: 517 ASELSVGWNNKVNNT 531