Jatropha Genome Database

JcCB0631101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0631101.10 + phase: 0 /pseudo
         (129 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g36010.1                                                        86   8e-18

>Glyma04g36010.1 
          Length = 508

 Score = 86.3 bits (212), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 36/48 (75%), Positives = 42/48 (87%)

Query: 54  DCSFIWDETSQLYFHSRSGIYHDPNGGWYYSSRDGLYYKFENGSYVLL 101
           D SF+WDE SQLYFH+ SG YHDPN GWYYS++DG YYKFE+G+YVLL
Sbjct: 12  DSSFVWDENSQLYFHASSGFYHDPNAGWYYSNKDGAYYKFEDGNYVLL 59