Jatropha Genome Database

JcCB0612491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0612491.10 + phase: 0 /partial
         (86 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g36970.1                                                        71   3e-13

>Glyma12g36970.1 
          Length = 279

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 43/56 (76%), Gaps = 1/56 (1%)

Query: 4   SVLIVYEKGSMLKRPSSGAVVKLVDFAHVTEANGVIDHNFLGGLCSLIKMISEILT 59
           SVL+VYEK  + K  ++  +VKLVDFAHV + NGVIDHNFLGGLCS IK + +IL 
Sbjct: 219 SVLVVYEK-DLGKGKATNPLVKLVDFAHVVDGNGVIDHNFLGGLCSFIKFLKDILA 273