Jatropha Genome Database

JcCB0611761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0611761.10 - phase: 0 /partial
         (81 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g12500.1                                                       107   4e-24

>Glyma02g12500.1 
          Length = 335

 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 61/77 (79%)

Query: 5   SGSQKVIGFDWSKKPGDPEISCDVDNFEDQTLLDSSSFVVVHGAGSFGHFQASKSGVHKG 64
           + S+K  G DWSK+PG  EI C+ + F D + +D S F+VVHGAGSFGHFQASKSGVH+G
Sbjct: 61  ASSEKPPGMDWSKRPGASEIFCNPEEFGDHSAIDCSPFIVVHGAGSFGHFQASKSGVHRG 120

Query: 65  GLDQPLVRAGFVATRIS 81
            L++PLV+ GFVATRIS
Sbjct: 121 QLNKPLVKGGFVATRIS 137