Jatropha Genome Database

JcCB0607681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0607681.10 - phase: 0 /pseudo/partial
         (246 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g35710.1                                                       172   2e-43
Glyma06g04550.1                                                       145   5e-35
Glyma04g04420.1                                                        82   4e-16
Glyma01g03940.1                                                        69   4e-12
Glyma02g03740.1                                                        65   7e-11
Glyma08g39960.1                                                        60   2e-09

>Glyma17g35710.1 
          Length = 347

 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/149 (58%), Positives = 109/149 (73%), Gaps = 5/149 (3%)

Query: 25  QTIAIIAVREGIIQLGSFDKIAEDLNLVINVQRKFSYLQSIPGVFAMQRPYLPIQHPYIL 84
           Q IA+IAVREG++QLGSF+K+AEDLN V+++QRKFSYL SIPGVF++QRP+LPIQHP I 
Sbjct: 160 QAIAVIAVREGLVQLGSFNKVAEDLNFVVSIQRKFSYLHSIPGVFSIQRPHLPIQHPCIA 219

Query: 85  KPNTRTIESEEIGFSV-DDKRQITGVKRLFDESFDDSPLKSINLGLN-SPQNGIT---GP 139
           KPN + +ES E+  S  +   Q+T V  + +E      + SINLG N  PQNG T   G 
Sbjct: 220 KPNLQMMESNEMTLSAYNATNQVTRVNGVHEEKSSFFSMISINLGRNPPPQNGTTTTQGS 279

Query: 140 PIWSIPPLLPTMSCSLGALLSRLPSVIPS 168
           P+WS PP LP MSCS GA+LS+LP V PS
Sbjct: 280 PLWSAPPSLPNMSCSFGAMLSKLPYVTPS 308


>Glyma06g04550.1 
          Length = 323

 Score =  145 bits (365), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 110/173 (63%), Gaps = 33/173 (19%)

Query: 9   SVEIQKEFSHITFLDS-QTIAIIAVREGIIQLGSFDKIAEDLNLVINVQRKFSYLQSIPG 67
           SVE Q +     F    Q+I IIAVREG++QLGSF+KI+EDLNLVI++QR+FSYLQSIPG
Sbjct: 145 SVEPQPKAWEFQFNSGIQSIVIIAVREGVVQLGSFNKISEDLNLVISIQRQFSYLQSIPG 204

Query: 68  VFAMQRPYLPIQHPYILKPNTRTIESEEIGFSVDDKRQITGVKRLFDESFDDSPLKSINL 127
           VF +QRPYLP+QHPYI+KP+   IE+  +               L+D            +
Sbjct: 205 VFGIQRPYLPLQHPYIVKPS--FIENNAM--------------TLYD------------M 236

Query: 128 GLNS-PQNGITGPPIWSIPPL--LPTMSCSLGALLSRLPSVIPSYGTTIQALD 177
           G N+ PQNG  GP + S  P   LPTM CS GALLS+LPS IP Y +T Q LD
Sbjct: 237 GWNTNPQNGAPGPSLCSGSPSLPLPTMPCSFGALLSKLPSGIPPYNST-QVLD 288


>Glyma04g04420.1 
          Length = 264

 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 50/63 (79%), Gaps = 1/63 (1%)

Query: 9   SVEIQKEFSHITFLDS-QTIAIIAVREGIIQLGSFDKIAEDLNLVINVQRKFSYLQSIPG 67
           SVE Q +     F    Q+I IIAVREG++QLGSF+KIAEDLNLVI++QR+FSYLQSIPG
Sbjct: 132 SVEPQPKAWEFQFNSGIQSIVIIAVREGVVQLGSFNKIAEDLNLVISIQRQFSYLQSIPG 191

Query: 68  VFA 70
           VF 
Sbjct: 192 VFG 194


>Glyma01g03940.1 
          Length = 376

 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 84/176 (47%), Gaps = 26/176 (14%)

Query: 3   LTRNRNSVEIQKEFSHITFLDS-QTIAIIAVREGIIQLGSFDKIAEDLNLVINVQRKFSY 61
           L+   NS +         FL   +TIA+IAVREG++QLG+  K+ EDL+ V+ +++KFSY
Sbjct: 148 LSAWHNSADSHPRTWEAQFLSGIKTIALIAVREGVVQLGAVHKVIEDLSYVVLLRKKFSY 207

Query: 62  LQSIPGVFAMQRPYLPIQHPYILKPNTRTIESEEIGFSVDDKRQITGVKRLFD-ESFDDS 120
           ++SIPGV         + HP     +    + E  G+   ++    G        S   +
Sbjct: 208 IESIPGVL--------LPHP---SSSAYPYKIEGGGYGAPEQWHYQGGNNHHHLASPQQT 256

Query: 121 PLKSINLGLNSPQNGITGPPIWSIPPLLPTMSCSLGALLSRLPSVIPSYGTTIQAL 176
            L   +   N P              + P+MS SL ALLS+LPSV+P   T  Q L
Sbjct: 257 ELYDHHGHFNLPLK------------ITPSMS-SLEALLSKLPSVVPPTTTQQQPL 299


>Glyma02g03740.1 
          Length = 385

 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 17/166 (10%)

Query: 3   LTRNRNSVEIQKEFSHITFLDS-QTIAIIAVREGIIQLGSFDKIAEDLNLVINVQRKFSY 61
           LT   NS +         FL   +TIA+IAVREG++QLG+  K+ EDL+ V+ +++KFSY
Sbjct: 148 LTAWHNSADSHPRTWEAQFLSGIKTIALIAVREGVVQLGAVHKVIEDLSYVVLLRKKFSY 207

Query: 62  LQSIPGVFAMQRPYLPIQHPYILKPNTRTIESEEIGFSVDDKRQITGVKRLFDESFDDSP 121
           ++SIPGV        P    Y  K     +E      +++  +   G+          S 
Sbjct: 208 IESIPGVLLPH----PSSSAYPYK-----VEGGGGYGALEQWQHFHGISNNHHHHHLSSS 258

Query: 122 LKSINLGLNSPQNGITGPPIWSIPPLLPTMSCSLGALLSRLPSVIP 167
            +     L     G    P+     + P+MS SL ALLS+LPSV+P
Sbjct: 259 PQQAE--LYDHHAGHFNLPL----KITPSMS-SLEALLSKLPSVVP 297


>Glyma08g39960.1 
          Length = 316

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 36/44 (81%)

Query: 25  QTIAIIAVREGIIQLGSFDKIAEDLNLVINVQRKFSYLQSIPGV 68
           +TIA+IAVREG+IQLG   K+ ED N V  +++KFSY++SIPGV
Sbjct: 164 KTIALIAVREGVIQLGGVHKVIEDQNYVFLLRKKFSYIESIPGV 207