Jatropha Genome Database

JcCB0601151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0601151.10 + phase: 1 /pseudo/partial
         (183 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g17950.1                                                        70   9e-13
Glyma15g41110.1                                                        69   3e-12

>Glyma08g17950.1 
          Length = 281

 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 109 EPRKTLAAEVIAQAQRKKESSDQHSKAWQAIPKPKGHSTLDYARWDRVXXXXXXXXXXXX 168
           EP+K+  A+ IA     KES++QHSK WQ IPKPKGHS LDYARWD V            
Sbjct: 202 EPKKS-TADAIAPKAPNKESTEQHSKGWQTIPKPKGHSALDYARWDSVEDDSSDDDDEDE 260

Query: 169 XXXXXQPQYRFRVRT 183
                 PQYRFRVRT
Sbjct: 261 DEESL-PQYRFRVRT 274


>Glyma15g41110.1 
          Length = 280

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 109 EPRKTLAAEVIAQAQRKKESSDQHSKAWQAIPKPKGHSTLDYARWDRVXXXXXXXXXXXX 168
           EP+K++A + IA     +E+++QHSK WQ IPKPKGHS LDYARWD V            
Sbjct: 201 EPKKSIA-DAIAPKAPNRETTEQHSKGWQTIPKPKGHSALDYARWDSVEDDSSDDDDDDE 259

Query: 169 XXXXXQPQYRFRVRT 183
                 PQYRFRVRT
Sbjct: 260 DEESL-PQYRFRVRT 273