Jatropha Genome Database

JcCB0600521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0600521.10 - phase: 0 /pseudo/partial
         (236 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g35850.1                                                       288   4e-78
Glyma12g01500.2                                                       285   2e-77
Glyma12g01500.1                                                       285   3e-77
Glyma16g02330.1                                                        70   2e-12

>Glyma09g35850.1 
          Length = 554

 Score =  288 bits (737), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 152/177 (85%), Positives = 164/177 (92%), Gaps = 1/177 (0%)

Query: 40  TVACCYGCGAPLQTLDQEAPGYVLPETYELKKRHRQLRTVLCGRCKLLSHGHMITAVGGN 99
            VA CYGCGAPL T D +APGYV PETYELKK+H QLRTVLC RC+LLSHG MITAVGG+
Sbjct: 94  AVASCYGCGAPLHTSDADAPGYVDPETYELKKKHHQLRTVLCRRCRLLSHGKMITAVGGH 153

Query: 100 GGYPGGKQFVSADELREKLSHLRHEKALIVKLVDIVDFNGSFLARVRDLAGANPIILVIT 159
           GGYPGGK FVSA+ELREKLSHLRHEKALIVKLVDIVDFNGSFL+RVRDLAG+NPI+LV+T
Sbjct: 154 GGYPGGKLFVSAEELREKLSHLRHEKALIVKLVDIVDFNGSFLSRVRDLAGSNPIVLVVT 213

Query: 160 KVIDLLPKETDLNCVGDWVVEATTKKKLNVLSVHLTSSKSLVGIAGVISEIQKEKKG 216
           KV DLLP++TDLNCVGDWVVEAT +KKLNVLSVHLTSSKSLVGI GVISEIQKEKKG
Sbjct: 214 KV-DLLPRDTDLNCVGDWVVEATMRKKLNVLSVHLTSSKSLVGITGVISEIQKEKKG 269


>Glyma12g01500.2 
          Length = 471

 Score =  285 bits (730), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 151/176 (85%), Positives = 164/176 (93%), Gaps = 1/176 (0%)

Query: 41  VACCYGCGAPLQTLDQEAPGYVLPETYELKKRHRQLRTVLCGRCKLLSHGHMITAVGGNG 100
           VA CYGCGAPL T D +APGYV PETYELKK+H QLRTVLC RC+LLSHG MITAVGG+G
Sbjct: 96  VASCYGCGAPLHTSDADAPGYVDPETYELKKKHHQLRTVLCRRCRLLSHGKMITAVGGHG 155

Query: 101 GYPGGKQFVSADELREKLSHLRHEKALIVKLVDIVDFNGSFLARVRDLAGANPIILVITK 160
           GYPGGK FV+A+ELREKLSHLRHEKALIVKLVDIVDFNGSFL+RVRDLAG+NPIILV+TK
Sbjct: 156 GYPGGKLFVTAEELREKLSHLRHEKALIVKLVDIVDFNGSFLSRVRDLAGSNPIILVVTK 215

Query: 161 VIDLLPKETDLNCVGDWVVEATTKKKLNVLSVHLTSSKSLVGIAGVISEIQKEKKG 216
           V DLLP++TDL+CVGDWVVEAT +KKLNVLSVHLTSSKSLVGI GVISEIQKEKKG
Sbjct: 216 V-DLLPRDTDLHCVGDWVVEATMRKKLNVLSVHLTSSKSLVGITGVISEIQKEKKG 270


>Glyma12g01500.1 
          Length = 549

 Score =  285 bits (729), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 151/176 (85%), Positives = 164/176 (93%), Gaps = 1/176 (0%)

Query: 41  VACCYGCGAPLQTLDQEAPGYVLPETYELKKRHRQLRTVLCGRCKLLSHGHMITAVGGNG 100
           VA CYGCGAPL T D +APGYV PETYELKK+H QLRTVLC RC+LLSHG MITAVGG+G
Sbjct: 96  VASCYGCGAPLHTSDADAPGYVDPETYELKKKHHQLRTVLCRRCRLLSHGKMITAVGGHG 155

Query: 101 GYPGGKQFVSADELREKLSHLRHEKALIVKLVDIVDFNGSFLARVRDLAGANPIILVITK 160
           GYPGGK FV+A+ELREKLSHLRHEKALIVKLVDIVDFNGSFL+RVRDLAG+NPIILV+TK
Sbjct: 156 GYPGGKLFVTAEELREKLSHLRHEKALIVKLVDIVDFNGSFLSRVRDLAGSNPIILVVTK 215

Query: 161 VIDLLPKETDLNCVGDWVVEATTKKKLNVLSVHLTSSKSLVGIAGVISEIQKEKKG 216
           V DLLP++TDL+CVGDWVVEAT +KKLNVLSVHLTSSKSLVGI GVISEIQKEKKG
Sbjct: 216 V-DLLPRDTDLHCVGDWVVEATMRKKLNVLSVHLTSSKSLVGITGVISEIQKEKKG 270


>Glyma16g02330.1 
          Length = 203

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 49/70 (70%), Gaps = 9/70 (12%)

Query: 95  AVGGNGGYPGGKQFVSADELREKLSHLRHEKALIVKL------VDIVDFNGSFLARVRDL 148
           AVG +GGYPGGK FV+A++LREKLSHLRHEKALIV L        I  FN     RV  L
Sbjct: 107 AVGRHGGYPGGKLFVTAEDLREKLSHLRHEKALIVILKCELITSRIRMFN---WYRVFCL 163

Query: 149 AGANPIILVI 158
           A +NPIIL+I
Sbjct: 164 AVSNPIILLI 173