Jatropha Genome Database

JcCB0599321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0599321.10 + phase: 0 /partial
         (108 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g04370.1                                                       121   1e-28
Glyma11g12160.1                                                       120   4e-28

>Glyma12g04370.1 
          Length = 413

 Score =  121 bits (304), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 80/105 (76%), Gaps = 2/105 (1%)

Query: 2   IDRPNEARAMYEKLQSHSSPKVSKKARQFMFSFQAMEMMK-VTGSNFSPKSTGYRKYFEK 60
           + R NE R MYEKL+SH +PKVSKKARQFM+SFQAMEMMK  TGS F  K++ Y+ YF+ 
Sbjct: 309 LSRSNETRGMYEKLKSHPNPKVSKKARQFMYSFQAMEMMKETTGSQFYLKNSDYQNYFDA 368

Query: 61  FIDDNVTNYLVEEAESRGALSEALPYMVFLVSPIFIVLFIAVQRG 105
           F+ +N +NY  +      A+++ LPY++FLVSPIF+VL IAV++G
Sbjct: 369 FV-ENKSNYPKDGLVQESAMNQVLPYILFLVSPIFVVLLIAVRKG 412


>Glyma11g12160.1 
          Length = 442

 Score =  120 bits (300), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 81/106 (76%), Gaps = 3/106 (2%)

Query: 2   IDRPNEARAMYEKLQSHSSPKVSKKARQFMFSFQAMEMMK-VTGSNFSPKSTGYRKYFEK 60
           + R NEAR MYEKL+SH +PKVSKKARQFM+SFQAMEMMK  TGS F  K++ Y+ YF+ 
Sbjct: 337 LSRSNEARGMYEKLKSHPNPKVSKKARQFMYSFQAMEMMKMTTGSQFYLKNSDYQNYFDA 396

Query: 61  FIDDNVTNYLVEEAE-SRGALSEALPYMVFLVSPIFIVLFIAVQRG 105
           F+ +N +NY   +      A+++ LPY++FLVSPIF+VL IAV++G
Sbjct: 397 FV-ENKSNYPGGDGPVQESAMNQVLPYILFLVSPIFVVLLIAVRKG 441