Jatropha Genome Database

JcCB0597261.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0597261.20 + phase: 0 /partial
         (82 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g32870.1                                                       107   3e-24
Glyma12g18240.1                                                       100   3e-22

>Glyma06g32870.1 
          Length = 460

 Score =  107 bits (266), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 66/86 (76%), Gaps = 6/86 (6%)

Query: 3  SKRNHTTELGCIACEELSDVGAGKEGWLVDNPSLLCALDTHSIALANRSLILITGWDDG- 61
          S+R++ TELGCIAC+EL ++GAGK  WLV+ P LLCA+DTHS+ LANRS IL+  W    
Sbjct: 2  SRRSYKTELGCIACDELGELGAGKPHWLVETPQLLCAIDTHSLLLANRSTILLLSWSSDS 61

Query: 62 -----PRLKIRPNLSPIESESITALE 82
               P LKIRP+LSPI++ESI+ALE
Sbjct: 62 TAAAPPPLKIRPDLSPIDAESISALE 87


>Glyma12g18240.1 
          Length = 304

 Score =  100 bits (249), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 66/85 (77%), Gaps = 5/85 (5%)

Query: 3  SKRNHTTELGCIACEELSDVGAGKEGWLVDNPSLLCALDTHSIALANRSLILITGWDDG- 61
          ++R++ TELGCIACEEL ++GAGK  WLV+ P LLCA+DTHS+ LANRS IL+  W    
Sbjct: 2  ARRSYKTELGCIACEELGELGAGKPHWLVETPQLLCAIDTHSLILANRSTILLLSWSSDS 61

Query: 62 ----PRLKIRPNLSPIESESITALE 82
              P LKIRP+LSPI++ESI+ALE
Sbjct: 62 SAAPPPLKIRPDLSPIDAESISALE 86