Jatropha Genome Database

JcCB0597261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0597261.10 - phase: 0 /partial
         (180 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g07200.1                                                       172   2e-43
Glyma02g41760.1                                                        51   6e-07

>Glyma14g07200.1 
          Length = 620

 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/184 (51%), Positives = 118/184 (64%), Gaps = 14/184 (7%)

Query: 4   DLSFSKALTPNVSLFPQRPKTLVLKPQLLFTPSLSHQNASFRRETRAFAGRSKNKQGP-- 61
           +L F       V  F QRPKT+          S+  QN+   R+ R++AGRSK   G   
Sbjct: 39  NLKFQSQKRFAVVSFSQRPKTIS-------EFSILGQNSWCTRDLRSYAGRSKKSGGAGS 91

Query: 62  ---RIDLDPGYLXXXXXXXXXXXXXLSESLFYRIKNPHK--IHADNFTEEELNLIGLGYD 116
              RI+ +  +               +ESLFYR+KNP     + DNFTE+EL  IGLGYD
Sbjct: 92  SGGRIEGNAEFRRRLKRNARARSKKYAESLFYRLKNPKGGGNYPDNFTEDELQQIGLGYD 151

Query: 117 RMVRFMEKDDPNLKHPYDWYKYGEFGPYSWRGVVLGDPIAGRFTDERVTLYSEVKDQEEW 176
           RMVRFMEKDDPNL+HPYDWYKYG++GPYSWRGVV+G+P+ GRF+DE VT+ SEVKD EEW
Sbjct: 152 RMVRFMEKDDPNLRHPYDWYKYGQYGPYSWRGVVVGEPVRGRFSDECVTIISEVKDHEEW 211

Query: 177 EKIE 180
           E+IE
Sbjct: 212 EQIE 215


>Glyma02g41760.1 
          Length = 510

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 28/32 (87%)

Query: 149 VVLGDPIAGRFTDERVTLYSEVKDQEEWEKIE 180
           +V+G+P+ GRF+DE VT+ SEVKD EEWE+IE
Sbjct: 106 IVVGEPVRGRFSDECVTIISEVKDHEEWEQIE 137