Jatropha Genome Database

JcCB0590911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0590911.10 - phase: 0 /partial
         (60 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g05310.1                                                       114   2e-26
Glyma19g27630.1                                                        56   1e-08

>Glyma16g05310.1 
          Length = 663

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/60 (86%), Positives = 56/60 (93%)

Query: 1   AVDGQHLILHPLNMKCLLHHYGSYDMLPQRINGTILQLETVTQSEAMRRRYRYLSHFSLT 60
           A DGQHLILHPLNMKCLLHHYGSYDMLP RI+G ILQLETVTQ+EA+RRRYR+LSHF LT
Sbjct: 418 AADGQHLILHPLNMKCLLHHYGSYDMLPHRISGRILQLETVTQTEAIRRRYRFLSHFPLT 477


>Glyma19g27630.1 
          Length = 223

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/31 (80%), Positives = 29/31 (93%)

Query: 30 RINGTILQLETVTQSEAMRRRYRYLSHFSLT 60
          RI+G ILQLE+VTQSEA+RRRYR+LSHF LT
Sbjct: 6  RISGRILQLESVTQSEAIRRRYRFLSHFPLT 36