Jatropha Genome Database

JcCB0590851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0590851.10 - phase: 0 /partial
         (59 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g25510.1                                                        53   9e-08
Glyma07g13300.1                                                        51   3e-07

>Glyma03g25510.1 
          Length = 455

 Score = 52.8 bits (125), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 31/59 (52%)

Query: 1   EARRAAERAYDVAKVDEXXXXXXXXXXXXXXXXXXXXXXXXQKQMHHNSNNDNIPIPIV 59
           EARRAAE+AYDVAKVDE                        Q QM HN N+ +IPIPIV
Sbjct: 397 EARRAAEKAYDVAKVDERVNRAVAAANRAANAARVAAVKAVQNQMLHNVNSTSIPIPIV 455


>Glyma07g13300.1 
          Length = 133

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 31/59 (52%)

Query: 1   EARRAAERAYDVAKVDEXXXXXXXXXXXXXXXXXXXXXXXXQKQMHHNSNNDNIPIPIV 59
           EARRA E+AYDVAKVDE                        Q QMHHN N+ +IPIPIV
Sbjct: 75  EARRATEKAYDVAKVDERVNRAVAAANRAANAARVAAVKAVQNQMHHNVNSMSIPIPIV 133