Jatropha Genome Database

JcCB0588921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0588921.10 - phase: 0 /pseudo/partial
         (179 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g01070.1                                                       129   2e-30
Glyma17g12660.1                                                       126   1e-29
Glyma17g12660.2                                                       125   2e-29
Glyma05g08320.1                                                       120   5e-28

>Glyma14g01070.1 
          Length = 628

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/114 (54%), Positives = 77/114 (67%), Gaps = 1/114 (0%)

Query: 66  RLQQNWKVKRQRVAAIAPGNEGFTIDLFDNSLYDSASLFRPTSLSTIRIDHDSAGMLAID 125
           RLQQNWKVKRQR AAI PGNEGFT DLFDNS YD A++ R  S+ST+R++HD+ GMLAI+
Sbjct: 166 RLQQNWKVKRQRQAAIVPGNEGFTFDLFDNS-YDQAAIIRSLSMSTVRVNHDAVGMLAIN 224

Query: 126 LPPKSCRSLHFGFLGVHSNEDVXXXXXXXXXXXVEHPSKETEKESASDNESIKE 179
           + P  C SL  GF+GV S++              EH   ET +ES SD E +K+
Sbjct: 225 VSPDLCHSLQLGFVGVQSDDTRRKSNENKSQFSGEHNLGETSEESLSDEECVKK 278


>Glyma17g12660.1 
          Length = 660

 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/114 (53%), Positives = 76/114 (66%), Gaps = 1/114 (0%)

Query: 66  RLQQNWKVKRQRVAAIAPGNEGFTIDLFDNSLYDSASLFRPTSLSTIRIDHDSAGMLAID 125
           RLQQNWKVKRQR AAI PGNEGFT DL DNS YD A++ R  S+ST+R++HD+AGMLAI+
Sbjct: 166 RLQQNWKVKRQRQAAIVPGNEGFTFDLLDNS-YDQAAIIRSLSMSTVRVNHDAAGMLAIN 224

Query: 126 LPPKSCRSLHFGFLGVHSNEDVXXXXXXXXXXXVEHPSKETEKESASDNESIKE 179
           + P  C SL FGF+G  S++              EH   E  +ES SD E +K+
Sbjct: 225 VSPDLCHSLQFGFVGAQSDDTWRKSNENKSHFSGEHNLGEMGEESLSDEECVKK 278


>Glyma17g12660.2 
          Length = 554

 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/114 (53%), Positives = 76/114 (66%), Gaps = 1/114 (0%)

Query: 66  RLQQNWKVKRQRVAAIAPGNEGFTIDLFDNSLYDSASLFRPTSLSTIRIDHDSAGMLAID 125
           RLQQNWKVKRQR AAI PGNEGFT DL DNS YD A++ R  S+ST+R++HD+AGMLAI+
Sbjct: 166 RLQQNWKVKRQRQAAIVPGNEGFTFDLLDNS-YDQAAIIRSLSMSTVRVNHDAAGMLAIN 224

Query: 126 LPPKSCRSLHFGFLGVHSNEDVXXXXXXXXXXXVEHPSKETEKESASDNESIKE 179
           + P  C SL FGF+G  S++              EH   E  +ES SD E +K+
Sbjct: 225 VSPDLCHSLQFGFVGAQSDDTWRKSNENKSHFSGEHNLGEMGEESLSDEECVKK 278


>Glyma05g08320.1 
          Length = 659

 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 76/114 (66%), Gaps = 1/114 (0%)

Query: 66  RLQQNWKVKRQRVAAIAPGNEGFTIDLFDNSLYDSASLFRPTSLSTIRIDHDSAGMLAID 125
           RLQQNWKVKRQR AAI PGNEGFT DLFDNS YD A++ R  S+ST+R++HD+AG LAI+
Sbjct: 165 RLQQNWKVKRQRQAAIVPGNEGFTFDLFDNS-YDQAAIIRSLSMSTVRVNHDAAGNLAIN 223

Query: 126 LPPKSCRSLHFGFLGVHSNEDVXXXXXXXXXXXVEHPSKETEKESASDNESIKE 179
           + P  C SL FGF+G  S++              E    +T +ES SD E +K+
Sbjct: 224 VSPDLCHSLQFGFVGAQSDDTRRKSNQNKSHFSGELNLGKTGEESLSDEECVKK 277