Jatropha Genome Database

JcCB0580021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0580021.20 - phase: 1 /partial
         (67 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g14420.1                                                       134   2e-32
Glyma12g33760.1                                                       130   3e-31
Glyma13g36730.1                                                       130   4e-31
Glyma06g43550.2                                                       100   3e-22
Glyma06g43550.1                                                        99   7e-22

>Glyma12g14420.1 
          Length = 576

 Score =  134 bits (338), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/67 (92%), Positives = 65/67 (97%)

Query: 1   RFDYILTQQAFVAVDNGAPVNRDLISNFLSDPVHGAIEVCAQLRPTLDISVPPDADFVRP 60
           RFDYILTQQA VAVDNGAP+N+DLISNFLSD VHGAIEVCAQLRPT+DISVPPDADFVRP
Sbjct: 510 RFDYILTQQALVAVDNGAPINQDLISNFLSDQVHGAIEVCAQLRPTVDISVPPDADFVRP 569

Query: 61  ELRQSSN 67
           ELRQSSN
Sbjct: 570 ELRQSSN 576


>Glyma12g33760.1 
          Length = 586

 Score =  130 bits (328), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/66 (89%), Positives = 63/66 (95%)

Query: 1   RFDYILTQQAFVAVDNGAPVNRDLISNFLSDPVHGAIEVCAQLRPTLDISVPPDADFVRP 60
           RFDYILTQQA VAVDNG PVNRDLISNFLSDPVHGAI+VCA+LRPT+DISVPPDADFVRP
Sbjct: 521 RFDYILTQQAMVAVDNGTPVNRDLISNFLSDPVHGAIKVCAELRPTVDISVPPDADFVRP 580

Query: 61  ELRQSS 66
           ELR S+
Sbjct: 581 ELRSSN 586


>Glyma13g36730.1 
          Length = 586

 Score =  130 bits (326), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/66 (87%), Positives = 63/66 (95%)

Query: 1   RFDYILTQQAFVAVDNGAPVNRDLISNFLSDPVHGAIEVCAQLRPTLDISVPPDADFVRP 60
           RFDYILTQQA VAVDNG P+NRDLISNFLSDPVHGAI+VCA+LRPT+DISVPPDADFVRP
Sbjct: 521 RFDYILTQQAMVAVDNGTPINRDLISNFLSDPVHGAIKVCAELRPTVDISVPPDADFVRP 580

Query: 61  ELRQSS 66
           ELR S+
Sbjct: 581 ELRSSN 586


>Glyma06g43550.2 
          Length = 475

 Score =  100 bits (249), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/50 (90%), Positives = 48/50 (96%)

Query: 1   RFDYILTQQAFVAVDNGAPVNRDLISNFLSDPVHGAIEVCAQLRPTLDIS 50
           RFDYILTQQA VAVDNGAP+N+DLISNFLSD VHGAIEVCAQLRPT+DIS
Sbjct: 426 RFDYILTQQALVAVDNGAPINQDLISNFLSDQVHGAIEVCAQLRPTVDIS 475


>Glyma06g43550.1 
          Length = 488

 Score = 99.4 bits (246), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/50 (90%), Positives = 48/50 (96%)

Query: 1   RFDYILTQQAFVAVDNGAPVNRDLISNFLSDPVHGAIEVCAQLRPTLDIS 50
           RFDYILTQQA VAVDNGAP+N+DLISNFLSD VHGAIEVCAQLRPT+DIS
Sbjct: 439 RFDYILTQQALVAVDNGAPINQDLISNFLSDQVHGAIEVCAQLRPTVDIS 488