Jatropha Genome Database
- JcCB0580021.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0580021.10 + phase: 1 /partial
(112 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma04g43500.1 172 6e-44
Glyma06g48230.1 169 5e-43
Glyma04g43500.2 97 3e-21
Glyma04g43500.3 67 5e-12
Glyma06g48230.2 65 1e-11
Glyma03g07620.1 65 2e-11
Glyma06g48230.3 65 2e-11
Glyma18g17050.1 63 7e-11
Glyma20g02910.1 50 4e-07
Glyma07g35050.1 49 9e-07
>Glyma04g43500.1
Length = 600
Score = 172 bits (437), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 84/114 (73%), Positives = 97/114 (85%), Gaps = 2/114 (1%)
Query: 1 QRLMLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNAD 58
Q+LMLQP + TKVVCLT V+ DELKDDE+YE+IL+DMR E KFGTLVNVVIPRP +D
Sbjct: 487 QKLMLQPALVATKVVCLTHAVSSDELKDDEDYEEILDDMRQECSKFGTLVNVVIPRPPSD 546
Query: 59 SEALPGVGKVFLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGEYDG 112
E GVGKVFLEY DI+GATKARAG+NGRKF GNQVVAV++PENKF QG+Y+G
Sbjct: 547 GEPAAGVGKVFLEYVDIDGATKARAGLNGRKFDGNQVVAVFYPENKFAQGDYEG 600
>Glyma06g48230.1
Length = 575
Score = 169 bits (429), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/114 (72%), Positives = 96/114 (84%), Gaps = 2/114 (1%)
Query: 1 QRLMLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNAD 58
Q+LMLQP + TKVVCLT V+ DELKDDE+Y++IL+DMR E KFGTLVNVVIPRP D
Sbjct: 462 QKLMLQPALVATKVVCLTHAVSSDELKDDEDYDEILDDMRQECSKFGTLVNVVIPRPPPD 521
Query: 59 SEALPGVGKVFLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGEYDG 112
E GVGKVFLEY DI+GATKARAG+NGRKF GNQVVAV++PENKF QG+Y+G
Sbjct: 522 GEPAAGVGKVFLEYVDIDGATKARAGLNGRKFDGNQVVAVFYPENKFAQGDYEG 575
>Glyma04g43500.2
Length = 573
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 56/70 (80%), Gaps = 2/70 (2%)
Query: 1 QRLMLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNAD 58
Q+LMLQP + TKVVCLT V+ DELKDDE+YE+IL+DMR E KFGTLVNVVIPRP +D
Sbjct: 487 QKLMLQPALVATKVVCLTHAVSSDELKDDEDYEEILDDMRQECSKFGTLVNVVIPRPPSD 546
Query: 59 SEALPGVGKV 68
E GVGKV
Sbjct: 547 GEPAAGVGKV 556
>Glyma04g43500.3
Length = 535
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 38/49 (77%), Gaps = 2/49 (4%)
Query: 1 QRLMLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTL 47
Q+LMLQP + TKVVCLT V+ DELKDDE+YE+IL+DMR E KFG
Sbjct: 487 QKLMLQPALVATKVVCLTHAVSSDELKDDEDYEEILDDMRQECSKFGNF 535
>Glyma06g48230.2
Length = 510
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 38/47 (80%), Gaps = 2/47 (4%)
Query: 1 QRLMLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFG 45
Q+LMLQP + TKVVCLT V+ DELKDDE+Y++IL+DMR E KFG
Sbjct: 462 QKLMLQPALVATKVVCLTHAVSSDELKDDEDYDEILDDMRQECSKFG 508
>Glyma03g07620.1
Length = 197
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 46/89 (51%), Gaps = 26/89 (29%)
Query: 8 LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKF----------------------- 44
L TKVVCLT + DELKDDE+YE+IL+DMR +
Sbjct: 100 LATKVVCLTHTIYSDELKDDEDYEEILDDMRQDLYNLCPRILVHCMSMKIYLHISLFLFS 159
Query: 45 ---GTLVNVVIPRPNADSEALPGVGKVFL 70
TLVNVVIPRP D E + GVGK+ L
Sbjct: 160 LYKCTLVNVVIPRPPPDGEPVTGVGKIRL 188
>Glyma06g48230.3
Length = 510
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 38/49 (77%), Gaps = 2/49 (4%)
Query: 1 QRLMLQP--LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTL 47
Q+LMLQP + TKVVCLT V+ DELKDDE+Y++IL+DMR E KF L
Sbjct: 462 QKLMLQPALVATKVVCLTHAVSSDELKDDEDYDEILDDMRQECSKFANL 510
>Glyma18g17050.1
Length = 96
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 44/67 (65%), Gaps = 9/67 (13%)
Query: 1 QRLMLQPLPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNADSE 60
++LMLQP + T+VV KDDE+YE+IL+DMR E KFGTLVN+VI RP D E
Sbjct: 39 EKLMLQP----ALVATKVV-----KDDEDYEEILDDMRKECSKFGTLVNMVISRPPPDGE 89
Query: 61 ALPGVGK 67
G GK
Sbjct: 90 PAVGFGK 96
>Glyma20g02910.1
Length = 392
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 13/106 (12%)
Query: 8 LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVI---PRPNAD-SEALP 63
+PT+V+ L +V P E+ D+E ED ++ +E K+GT+ V+I PN EA+
Sbjct: 284 VPTRVLLLRNMVGPGEV--DDELED---EVGSECAKYGTVTRVLIFEITEPNFPVHEAV- 337
Query: 64 GVGKVFLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGE 109
++F+++ E TKA ++GR FGG V A ++ E KF + E
Sbjct: 338 ---RIFVQFERSEETTKALVDLDGRYFGGRVVRASFYDEEKFSKNE 380
>Glyma07g35050.1
Length = 384
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 8 LPTKVVCLTQVVNPDELKDDEEYEDILEDMRTEGGKFGTLVNVVIPRPNADSEALPGVGK 67
+PT+V+ L +V P E+ D+E ED ++ +E K+G + V+I + + +
Sbjct: 276 VPTRVLLLRNMVGPGEV--DDELED---EVGSECAKYGIVTRVLIFEITEPNFPVHEAVR 330
Query: 68 VFLEYADIEGATKARAGMNGRKFGGNQVVAVYFPENKFYQGE 109
+F+++ E TKA ++GR FGG V A ++ E KF + E
Sbjct: 331 IFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEEKFSKNE 372