Jatropha Genome Database

JcCB0579481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0579481.10 - phase: 2 /partial
         (63 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g16590.2                                                        72   9e-14
Glyma02g16590.1                                                        72   9e-14
Glyma02g16590.3                                                        71   3e-13
Glyma10g03240.2                                                        67   6e-12
Glyma10g03240.1                                                        62   1e-10

>Glyma02g16590.2 
          Length = 260

 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 43/58 (74%)

Query: 1   LKVIEKAIVNSDLGLTPSNDGEVIRLSIPQLTSDRRKVFPLFFFWDLASGSLSNRSLR 58
           LK IEKAIV+SDLG+TP+NDGE+IRLSIPQLTSDRRK            G ++ R++R
Sbjct: 151 LKAIEKAIVSSDLGMTPNNDGELIRLSIPQLTSDRRKELSKIVAKQAEEGKVALRNIR 208


>Glyma02g16590.1 
          Length = 261

 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 43/58 (74%)

Query: 1   LKVIEKAIVNSDLGLTPSNDGEVIRLSIPQLTSDRRKVFPLFFFWDLASGSLSNRSLR 58
           LK IEKAIV+SDLG+TP+NDGE+IRLSIPQLTSDRRK            G ++ R++R
Sbjct: 151 LKAIEKAIVSSDLGMTPNNDGELIRLSIPQLTSDRRKELSKIVAKQAEEGKVALRNIR 208


>Glyma02g16590.3 
          Length = 247

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/38 (86%), Positives = 37/38 (97%)

Query: 1   LKVIEKAIVNSDLGLTPSNDGEVIRLSIPQLTSDRRKV 38
           LK IEKAIV+SDLG+TP+NDGE+IRLSIPQLTSDRRKV
Sbjct: 151 LKAIEKAIVSSDLGMTPNNDGELIRLSIPQLTSDRRKV 188


>Glyma10g03240.2 
          Length = 173

 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 40/58 (68%)

Query: 1   LKVIEKAIVNSDLGLTPSNDGEVIRLSIPQLTSDRRKVFPLFFFWDLASGSLSNRSLR 58
           LK IEK IV+SDLG+TP+NDGE I+L IPQLTSDRRK            G ++ R++R
Sbjct: 63  LKAIEKTIVSSDLGMTPNNDGESIQLRIPQLTSDRRKELSKIVAKQAEEGKVALRNIR 120


>Glyma10g03240.1 
          Length = 204

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 40/58 (68%)

Query: 1   LKVIEKAIVNSDLGLTPSNDGEVIRLSIPQLTSDRRKVFPLFFFWDLASGSLSNRSLR 58
           LK IEK IV+SDLG+TP+NDGE I+L IPQLTSDRRK            G ++ R++R
Sbjct: 63  LKAIEKTIVSSDLGMTPNNDGESIQLRIPQLTSDRRKELSKIVAKQAEEGKVALRNIR 120