Jatropha Genome Database

JcCB0577381.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0577381.10 + phase: 0 /pseudo/partial
         (110 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g41090.1                                                        70   4e-13
Glyma03g33360.1                                                        69   1e-12
Glyma19g36070.1                                                        66   6e-12
Glyma14g18130.1                                                        66   9e-12
Glyma18g40420.1                                                        48   3e-06

>Glyma18g41090.1 
          Length = 96

 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 52/95 (54%), Gaps = 18/95 (18%)

Query: 16  RPKVHCSRKLLSGDLDLGIVVLIQSMNMDGGMKILSLFMMLLSMGIAVYPLQYVFCLFSW 75
           RPK   +RKLLSGDLDLGIV L        G + L          I    L+Y  C  + 
Sbjct: 11  RPK-DITRKLLSGDLDLGIVGLDSFTEHGQGSEDLI---------IVHEALEYGDCHST- 59

Query: 76  FRCSQLQLIPKYGIFENINSIGELGKMPQWTAEKP 110
                  LIP+YGIFEN+NS+ EL KMPQWT EKP
Sbjct: 60  -------LIPQYGIFENVNSVDELAKMPQWTEEKP 87


>Glyma03g33360.1 
          Length = 373

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/95 (45%), Positives = 49/95 (51%), Gaps = 17/95 (17%)

Query: 16  RPKVHCSRKLLSGDLDLGIVVLIQSMNMDGGMKILSLFMMLLSMGIAVYPLQYVFCLFSW 75
           RPK   +RKLLSGDLDLGIV L        G + L +    L  G               
Sbjct: 89  RPK-DITRKLLSGDLDLGIVGLDTFSEHGQGSEDLIIVHEALEYG--------------- 132

Query: 76  FRCSQLQLIPKYGIFENINSIGELGKMPQWTAEKP 110
             C     IP+YGIFEN+NS+ EL KMPQWT EKP
Sbjct: 133 -DCRLSLAIPQYGIFENVNSVDELAKMPQWTEEKP 166


>Glyma19g36070.1 
          Length = 368

 Score = 66.2 bits (160), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 43/95 (45%), Positives = 47/95 (49%), Gaps = 17/95 (17%)

Query: 16  RPKVHCSRKLLSGDLDLGIVVLIQSMNMDGGMKILSLFMMLLSMGIAVYPLQYVFCLFSW 75
           RPK    RKLLSGDLDLGIV L        G   L +    L  G               
Sbjct: 84  RPK-DIVRKLLSGDLDLGIVGLDTFSEHGQGNDDLIIVHEALEYG--------------- 127

Query: 76  FRCSQLQLIPKYGIFENINSIGELGKMPQWTAEKP 110
             C     IP+YGIFEN+NS+ EL KMPQWT EKP
Sbjct: 128 -DCRLSLAIPQYGIFENVNSLDELAKMPQWTEEKP 161


>Glyma14g18130.1 
          Length = 218

 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 52/96 (54%), Gaps = 19/96 (19%)

Query: 16  RPKVHCSRKLLSGDLDLGIVVLIQSMNMDG-GMKILSLFMMLLSMGIAVYPLQYVFCLFS 74
            PK + +RKLLSGDLDLGIV L  + N  G G + L +    L  G              
Sbjct: 2   EPK-YITRKLLSGDLDLGIVGL-DTFNEHGQGSEDLIIIHEALEYG-------------- 45

Query: 75  WFRCSQLQLIPKYGIFENINSIGELGKMPQWTAEKP 110
              C     IP+YGIFEN+NS+ +L KMPQWT EKP
Sbjct: 46  --DCHLSVAIPQYGIFENVNSMDKLAKMPQWTEEKP 79


>Glyma18g40420.1 
          Length = 68

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/27 (70%), Positives = 23/27 (85%)

Query: 84  IPKYGIFENINSIGELGKMPQWTAEKP 110
           IP++GIFEN+NS+ EL KM QWT EKP
Sbjct: 5   IPQHGIFENVNSLDELAKMLQWTKEKP 31