Jatropha Genome Database

JcCB0571821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0571821.10 + phase: 2 /partial
         (133 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g02890.1                                                       114   3e-26
Glyma15g13850.1                                                       102   1e-22
Glyma13g20720.1                                                        62   1e-10

>Glyma09g02890.1 
          Length = 682

 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/133 (50%), Positives = 89/133 (66%), Gaps = 3/133 (2%)

Query: 1   YGLKTEEILMLDDRELNQYVSVKKLVPYKEREWKVPDNKRFQQKMWIRELMRGRLNHLKT 60
           +GL   EIL++DD+ELNQY+S+KKL PY+E EWK+   KR+  KM  +EL+  R++ L  
Sbjct: 553 FGLSASEILLMDDKELNQYISLKKLAPYQEEEWKLSKQKRYMLKMRAKELL--RMSSLDK 610

Query: 61  NKKNRSKVDGDKSTSSVDSHQDGQVEFEESNVKKEKLSRQAKRRRRQAELKLPASRLVAY 120
            K+  SKVD  K TSS  S ++ +   EESN+  + LSR+AKRRR+ A LKL  SRL AY
Sbjct: 611 KKRKNSKVDSGKITSSK-SVENEKPSTEESNINTDNLSRKAKRRRQVANLKLSQSRLKAY 669

Query: 121 QNIQSKAKGKRKH 133
             I SK+K   KH
Sbjct: 670 GKIPSKSKHGGKH 682


>Glyma15g13850.1 
          Length = 682

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/133 (48%), Positives = 85/133 (63%), Gaps = 2/133 (1%)

Query: 1   YGLKTEEILMLDDRELNQYVSVKKLVPYKEREWKVPDNKRFQQKMWIRELMRGRLNHLKT 60
           +GL   EIL++DD+ELNQYVS+KKL PY+E EWK+   KR+  KM  +EL+R      K 
Sbjct: 552 FGLSASEILLMDDKELNQYVSLKKLAPYQEEEWKLSKQKRYMLKMRAKELLRTSSLDKKK 611

Query: 61  NKKNRSKVDGDKSTSSVDSHQDGQVEFEESNVKKEKLSRQAKRRRRQAELKLPASRLVAY 120
            KK++      K TSS    ++ +   EESN+ ++ LSR+AKRRR+ A LKL  SRL AY
Sbjct: 612 RKKSKVDS--GKITSSKSVVENEKPSTEESNINRDNLSRKAKRRRQVANLKLSQSRLKAY 669

Query: 121 QNIQSKAKGKRKH 133
             I SK+K   KH
Sbjct: 670 GKIPSKSKHGGKH 682


>Glyma13g20720.1 
          Length = 622

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 37/51 (72%)

Query: 1   YGLKTEEILMLDDRELNQYVSVKKLVPYKEREWKVPDNKRFQQKMWIRELM 51
           +GL   EIL++DD++ NQYVS+KKL PY E EWK+   KR+  KM  +EL+
Sbjct: 520 FGLSASEILLMDDKDFNQYVSLKKLAPYWEEEWKLSKQKRYMLKMRAKELL 570