Jatropha Genome Database

JcCB0551851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0551851.10 - phase: 0 /partial
         (106 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g04950.1                                                       144   2e-35
Glyma02g44000.3                                                       139   9e-34
Glyma02g44000.1                                                       139   9e-34
Glyma15g03870.1                                                        49   9e-07

>Glyma14g04950.1 
          Length = 1370

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/106 (75%), Positives = 93/106 (87%), Gaps = 4/106 (3%)

Query: 1   MEEDRTAATGSKNLVFAVNGQRFELSSIDPSTTLLEFLRSDTSFKSVKLSCGEGGCGACI 60
           ME ++T  +    LVF VNG+RFELS +DPSTTLL+FLR+ T FKSVKL CGEGGCGAC+
Sbjct: 1   MELEKTPTS----LVFGVNGERFELSHVDPSTTLLQFLRTRTRFKSVKLGCGEGGCGACV 56

Query: 61  VLVSKYDPVLDQVEDFTVSSCLTLLCSINGCSITTTEGLGNSKDGF 106
           VL+SKYDPVLDQVEDFT SSCLTLLCSI+GCSITT+EG+GNSK+GF
Sbjct: 57  VLISKYDPVLDQVEDFTASSCLTLLCSIHGCSITTSEGIGNSKEGF 102


>Glyma02g44000.3 
          Length = 1366

 Score =  139 bits (349), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 74/94 (78%), Positives = 87/94 (92%)

Query: 13  NLVFAVNGQRFELSSIDPSTTLLEFLRSDTSFKSVKLSCGEGGCGACIVLVSKYDPVLDQ 72
           +L+F VNG++FEL ++DPS TLLEFLR+ TSFKSVKL CGEGGCGAC+VL+SKYDPV D+
Sbjct: 10  SLIFGVNGEKFELYNVDPSITLLEFLRNHTSFKSVKLGCGEGGCGACVVLISKYDPVHDR 69

Query: 73  VEDFTVSSCLTLLCSINGCSITTTEGLGNSKDGF 106
           VEDFT SSCLTLLCSI+GCSITT+EG+GNSKDGF
Sbjct: 70  VEDFTASSCLTLLCSIHGCSITTSEGIGNSKDGF 103


>Glyma02g44000.1 
          Length = 1367

 Score =  139 bits (349), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 74/94 (78%), Positives = 87/94 (92%)

Query: 13  NLVFAVNGQRFELSSIDPSTTLLEFLRSDTSFKSVKLSCGEGGCGACIVLVSKYDPVLDQ 72
           +L+F VNG++FEL ++DPS TLLEFLR+ TSFKSVKL CGEGGCGAC+VL+SKYDPV D+
Sbjct: 10  SLIFGVNGEKFELYNVDPSITLLEFLRNHTSFKSVKLGCGEGGCGACVVLISKYDPVHDR 69

Query: 73  VEDFTVSSCLTLLCSINGCSITTTEGLGNSKDGF 106
           VEDFT SSCLTLLCSI+GCSITT+EG+GNSKDGF
Sbjct: 70  VEDFTASSCLTLLCSIHGCSITTSEGIGNSKDGF 103


>Glyma15g03870.1 
          Length = 1356

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 15  VFAVNGQRFELSSIDPSTTLLEFLRSDTSFKSVKLSCGEGGCGACIVLVSKYDPVLDQVE 74
           +  VNG R  L       TLLE+LR D      KL CGEGGCGAC V+VS++D  L +  
Sbjct: 8   ILYVNGVRRVLPDGFAHFTLLEYLR-DIGLTGTKLGCGEGGCGACTVMVSQFDRRLKKCS 66

Query: 75  DFTVSSCLTLLCSINGCSITTTEGLGNSKDGF 106
            + +++CL  L S+ G  + T EGLG+ K G 
Sbjct: 67  HYAINACLAPLYSVEGMHVITVEGLGSCKRGL 98