Jatropha Genome Database

JcCB0543811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0543811.10 + phase: 0 /partial
         (148 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g29460.1                                                       213   5e-56
Glyma16g33870.1                                                       213   6e-56

>Glyma09g29460.1 
          Length = 324

 Score =  213 bits (542), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 104/117 (88%), Positives = 105/117 (89%)

Query: 27  EHLGLPVFNTVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 86
           EHLGLPVFNTVAEAKAETKANASVIYVPPPF            LDLVVCITEGIPQHDMV
Sbjct: 74  EHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 133

Query: 87  RVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 143
           RVKAALN+QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV
Sbjct: 134 RVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 190


>Glyma16g33870.1 
          Length = 325

 Score =  213 bits (542), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 104/117 (88%), Positives = 105/117 (89%)

Query: 27  EHLGLPVFNTVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMV 86
           EHLGLPVFNTVAEAKAETKANASVIYVPPPF            LDLVVCITEGIPQHDMV
Sbjct: 75  EHLGLPVFNTVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMV 134

Query: 87  RVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 143
           RVKAALN+QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV
Sbjct: 135 RVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAV 191