Jatropha Genome Database

JcCB0534431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0534431.10 + phase: 0 /partial
         (104 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g06890.1                                                        51   3e-07

>Glyma08g06890.1 
          Length = 806

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 5/104 (4%)

Query: 1   DDREFDIMKPLQVRVDDSLVAQEPILPTSSEDKLSRRKQMDGSHVSQSQEEANTAIHNSE 60
           DDR  DIMKPLQVRV  S  A+     TS E +LS   Q D +   ++Q E +    + E
Sbjct: 708 DDRGLDIMKPLQVRVAVSREARVLAATTSPEAELSEMNQNDQASSVRNQREVDPEEQDYE 767

Query: 61  LKQSEDMQAKGVLYCELNADNGFLAKTDDVAVEENMILTTAEEP 104
           L ++ +++  GVL  + + ++  +    + +       T  EEP
Sbjct: 768 LNEAVNLEGNGVLVIKHSEESSMIVDQSNPSSH-----TATEEP 806