Jatropha Genome Database

JcCB0534371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0534371.10 - phase: 0 
         (64 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g23320.1                                                        62   1e-10

>Glyma08g23320.1 
          Length = 550

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 33/40 (82%), Gaps = 1/40 (2%)

Query: 3  GSQSVQPQFIASTGNG-SFSNAPLIENSDVDQIIVPDVTS 41
          GS S QPQFIASTG   SFSNAPLIENSD DQI+VPD TS
Sbjct: 5  GSSSGQPQFIASTGGSRSFSNAPLIENSDTDQIVVPDRTS 44