Jatropha Genome Database

JcCB0533111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0533111.10 + phase: 0 /partial
         (106 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g32360.1                                                        68   2e-12

>Glyma19g32360.1 
          Length = 1076

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 3/94 (3%)

Query: 13  KDGFELPSRLSVSAADCILAITEALTKKNKVSSNNPKLLNSDALHRPISLVPAVSREKKA 72
           +DGFELPSRL VSAADC L+++ ALT   KV+ +    LN+ A  + I+ V + + +KK 
Sbjct: 189 QDGFELPSRLGVSAADCFLSLSGALT---KVAESKKSKLNTRAKDQEITFVQSPTIDKKV 245

Query: 73  KPAHKSSEESTFDMAYLLWDLIGELITLTQRLLA 106
               KS   S  +  Y LW  + ++I L QRLL+
Sbjct: 246 NLESKSLLMSKIERDYTLWHHLDDIICLVQRLLS 279