Jatropha Genome Database

JcCB0529981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0529981.10 - phase: 0 /partial
         (55 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g41270.1                                                        60   5e-10
Glyma14g39650.1                                                        58   2e-09
Glyma05g27090.1                                                        50   5e-07
Glyma08g10070.1                                                        48   2e-06

>Glyma02g41270.1 
          Length = 592

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query: 1   GCYIASLRDANKYCNTILGRLSKARGCMKSMLILSVAIAVGAVIM 45
           G   A L+DA+KYC  +LG+LS+  GC+KSM++LSV +AVGAV M
Sbjct: 529 GARHALLKDADKYCKVLLGQLSQGHGCLKSMIVLSVVLAVGAVFM 573


>Glyma14g39650.1 
          Length = 588

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 5   ASLRDANKYCNTILGRLSKARGCMKSMLILSVAIAVGAVIMF 46
           A L+DA+KYC  +LGRLS+  GCMKS+ ILSV  AVGA+ ++
Sbjct: 529 ALLKDADKYCKALLGRLSQDHGCMKSVTILSVVFAVGAIFVY 570


>Glyma05g27090.1 
          Length = 597

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%)

Query: 5   ASLRDANKYCNTILGRLSKARGCMKSMLILSVAIAVGAVIMFGQNSQS 52
           A  +DA+KYC  ILGR+S++ GCM  +    +A+AVGA +    N +S
Sbjct: 536 AHFKDADKYCKIILGRVSRSHGCMTCLTFTVLALAVGAAVSLSPNLES 583


>Glyma08g10070.1 
          Length = 599

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 5   ASLRDANKYCNTILGRLSKARGCMKSMLILSVAIAVGAVIMFGQNSQS 52
           A  +DA+KYC  ILGR+S++ GC   +    +A+AVGA +    N +S
Sbjct: 538 AHFKDADKYCKIILGRVSRSHGCTTCLTFTVLALAVGAAVSLSPNLES 585