Jatropha Genome Database

JcCB0528831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0528831.10 - phase: 1 /partial
         (229 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g11750.1                                                        91   1e-18

>Glyma13g11750.1 
          Length = 1056

 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 21/156 (13%)

Query: 6   DNVCGFTNSLFSTGSGKSVNISSAGLVRAKTLLGLENNNVSNFQGFQHPRKSPKVNEQNE 65
           D+  GF+NSLF+TGSGK V ISS+GLVRAKTLL   ++++      Q P ++ K++   E
Sbjct: 65  DDGFGFSNSLFTTGSGKKVTISSSGLVRAKTLLDTIDSSI------QSPHRTNKLHAIGE 118

Query: 66  WQDLSYLRMKEDMDNSGM----QSVSTPSLIGSKLSNAVTPNLLQSELHNSTPKPPPIKF 121
            +     + +E+ D S      + + +PS+ G     A+  N  +        K  PIKF
Sbjct: 119 KRK----QRQEEEDESPQLKLHRVIDSPSVGGG--CRALKKNGFE---ETDAYKQAPIKF 169

Query: 122 HTAGGRSLSVSSDALERAKSLLGDPDLGTFLNEDDA 157
           HTAGGRS+S+S DAL+RA+SLLG  D+G      DA
Sbjct: 170 HTAGGRSISISKDALQRAQSLLG--DVGDLFEGGDA 203