Jatropha Genome Database

JcCB0517161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0517161.10 + phase: 1 /TE/partial
         (128 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g28890.2                                                        95   2e-20
Glyma16g28890.1                                                        93   6e-20
Glyma10g30670.1                                                        81   2e-16

>Glyma16g28890.2 
          Length = 1019

 Score = 94.7 bits (234), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/101 (43%), Positives = 56/101 (55%), Gaps = 13/101 (12%)

Query: 23  VKVGFVAQGRGKGRDMSRIQCYSCKNYGHIAANCGKKFCNYCKQSGHVIKECPTRPQNRK 82
           V V +VA+G+ K  DM  IQC  CK +GH A+NC  KFCNYCK+ GH+IKECP RP  R 
Sbjct: 858 VPVAYVARGKPKSHDMRTIQCLCCKQFGHYASNCPNKFCNYCKKDGHIIKECPIRPPKR- 916

Query: 83  ANAAPIAPNNLTHFAAPIVSATLSTPVEPVIL---TPDDEP 120
                    N+T F A + S+  +    P  +    PD  P
Sbjct: 917 ---------NVTAFTASVDSSIPNNSANPTPVQQQAPDPAP 948


>Glyma16g28890.1 
          Length = 2359

 Score = 93.2 bits (230), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/101 (43%), Positives = 56/101 (55%), Gaps = 13/101 (12%)

Query: 23  VKVGFVAQGRGKGRDMSRIQCYSCKNYGHIAANCGKKFCNYCKQSGHVIKECPTRPQNRK 82
           V V +VA+G+ K  DM  IQC  CK +GH A+NC  KFCNYCK+ GH+IKECP RP  R 
Sbjct: 662 VPVAYVARGKPKSHDMRTIQCLCCKQFGHYASNCPNKFCNYCKKDGHIIKECPIRPPKR- 720

Query: 83  ANAAPIAPNNLTHFAAPIVSATLSTPVEPVIL---TPDDEP 120
                    N+T F A + S+  +    P  +    PD  P
Sbjct: 721 ---------NVTAFTASVDSSIPNNSANPTPVQQQAPDPAP 752


>Glyma10g30670.1 
          Length = 1904

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 5/85 (5%)

Query: 17  LQQENTVKVGFVAQGRGKGRDMSRIQCYSCKNYGHIAANCGKKFCNYCKQSGHVIKECPT 76
           ++  +  +V + AQ + K RD+S IQC+ CK  GH A++C KKFCNYCK+  H+IKECP 
Sbjct: 618 MELRSDFEVAYAAQRKPKRRDLSAIQCFCCKELGHFASHCPKKFCNYCKKDDHIIKECPI 677

Query: 77  RPQNR-----KANAAPIAPNNLTHF 96
           R   +      A A P   + L  F
Sbjct: 678 RSPRKIETAFTAAAGPSTASGLKSF 702