Jatropha Genome Database

JcCB0508071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0508071.10 + phase: 0 /partial
         (136 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g34830.1                                                        62   2e-10
Glyma04g14770.1                                                        62   2e-10
Glyma04g32990.1                                                        50   5e-07
Glyma06g21190.1                                                        50   8e-07
Glyma02g36440.1                                                        48   2e-06
Glyma17g08230.1                                                        47   6e-06

>Glyma09g34830.1 
          Length = 1211

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/33 (78%), Positives = 30/33 (90%)

Query: 60  NAPRKTSLKPLHWVKVTRAVQGSLWADSQKQEN 92
           NAP+KT LKPLHWVKV RA +GSLWADSQKQ++
Sbjct: 784 NAPKKTLLKPLHWVKVARAAKGSLWADSQKQDS 816


>Glyma04g14770.1 
          Length = 1179

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/33 (78%), Positives = 30/33 (90%)

Query: 60  NAPRKTSLKPLHWVKVTRAVQGSLWADSQKQEN 92
           NAP+KT LKPLHWVKV RA +GSLWADSQKQ++
Sbjct: 769 NAPKKTLLKPLHWVKVARAAKGSLWADSQKQDS 801


>Glyma04g32990.1 
          Length = 1148

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/30 (66%), Positives = 26/30 (86%)

Query: 61  APRKTSLKPLHWVKVTRAVQGSLWADSQKQ 90
           A R++SLKPLHW KVTRA+QGSLW + Q++
Sbjct: 721 AARRSSLKPLHWSKVTRALQGSLWDELQRR 750


>Glyma06g21190.1 
          Length = 1075

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/30 (66%), Positives = 26/30 (86%)

Query: 61  APRKTSLKPLHWVKVTRAVQGSLWADSQKQ 90
           A R++SLKPLHW KVTRA+QGSLW + Q++
Sbjct: 761 AARRSSLKPLHWSKVTRALQGSLWDELQRR 790


>Glyma02g36440.1 
          Length = 1138

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/29 (65%), Positives = 26/29 (89%)

Query: 67  LKPLHWVKVTRAVQGSLWADSQKQENLSS 95
           LKPLHW+K++RAVQGSLWA++QK   +S+
Sbjct: 728 LKPLHWLKLSRAVQGSLWAETQKSGEVSN 756


>Glyma17g08230.1 
          Length = 1132

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/23 (78%), Positives = 23/23 (100%)

Query: 67  LKPLHWVKVTRAVQGSLWADSQK 89
           LKPLHW+K++RAVQGSLWA++QK
Sbjct: 708 LKPLHWLKLSRAVQGSLWAETQK 730