Jatropha Genome Database

JcCB0506361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0506361.10 + phase: 0 /pseudo/partial
         (235 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g12160.1                                                       234   7e-62

>Glyma06g12160.1 
          Length = 361

 Score =  234 bits (596), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 108/142 (76%), Positives = 126/142 (88%)

Query: 6   RAKYITGTVDALQSKPGGGAEWLSSLRKSDLQVVVDALCTLPGVGPKVASCIALFSLDQH 65
           RAKYI GT++AL+SKPGGG EWL SLRK +L+ V+ ALCTLPGVGPKVA+CIALFSLDQH
Sbjct: 214 RAKYIIGTINALKSKPGGGEEWLRSLRKMELRDVISALCTLPGVGPKVAACIALFSLDQH 273

Query: 66  HAIPVDTHVWQIATRYLLPELAAVRLTPKLCSRVADAFVSKYGKYAGWAQTLLFIAELPS 125
           HA+PVDTHVW+IAT+YLLPELA  +LTPKLC RVA+AFV+KYGKYAGWAQTLLFIAELPS
Sbjct: 274 HAVPVDTHVWRIATKYLLPELAGSQLTPKLCDRVAEAFVTKYGKYAGWAQTLLFIAELPS 333

Query: 126 QKTLLPSHFWTINEKKSATKKG 147
           QK LLPSH  T+ ++ +A  +G
Sbjct: 334 QKALLPSHLLTVKQRNAAKIEG 355